Regulon of LexA in Lactobacillus plantarum WCFS1
| Regulator type: | Transcription factor |
| TF locus tag: | lp_2063 |
| Regulator family: | LexA |
| Regulation mode: | repressor |
| Biological process: | SOS response |
| Effector: | DNA damage |
| Regulog: | LexA - Lactobacillaceae |
| Statistics of regulated genes: | |
| - Genes | 17 |
| - Operons | 9 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Lactobacillaceae
- By trascription factor - LexA
- By TF family - LexA
- By effector - DNA damage
- By pathway - SOS response
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -146
Score: 5 Sequence: GCGAAAGTATGTTCGA
Locus tag: lp_0772
Name: uvrB Funciton: Excinuclease ABC, subunit B
Locus tag: lp_0773
Name: uvrA Funciton: Excinuclease ABC, subunit A |
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uvrB
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Excinuclease ABC, subunit B
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uvrA
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Excinuclease ABC, subunit A
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Position: -32
Score: 4.3 Sequence: GAGAACGTTTGTTCAG
Locus tag: lp_2694
Name: addB Funciton: ATP-dependent nuclease, subunit B
Locus tag: lp_2693
Name: addA Funciton: ATP-dependent nuclease, subunit A |
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addB
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ATP-dependent nuclease, subunit B
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addA
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ATP-dependent nuclease, subunit A
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Position: -81
Score: 5 Sequence: CCGAACATTTGTTTGA
Locus tag: lp_2063
Name: lexA Funciton: SOS-response regulator and protease LexA, LexA family (EC 3.4.21.88) |
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lexA
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SOS-response regulator and protease LexA, LexA family (EC 3.4.21.88)
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Position: -191
Score: 4.3 Sequence: TAGAACAACTGTTTGG
Locus tag: lp_1899
Name: dnaE Funciton: DNA polymerase III alpha subunit (EC 2.7.7.7) |
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dnaE
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DNA polymerase III alpha subunit (EC 2.7.7.7)
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Position: -90
Score: 4.8 Sequence: ACGAACTTTTGTTCGC
Locus tag: lp_2301
Name: recA Funciton: DNA recombinase A |
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recA
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DNA recombinase A
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Position: -185
Score: 4.9 Sequence: GCGAACGTGTGTTTGC
Locus tag: lp_1840
Name: parE Funciton: Topoisomerase IV subunit B (EC 5.99.1.-)
Locus tag: lp_1839
Name: parC Funciton: Topoisomerase IV subunit A (EC 5.99.1.-) |
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parE
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Topoisomerase IV subunit B (EC 5.99.1.-)
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parC
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Topoisomerase IV subunit A (EC 5.99.1.-)
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Position: -192
Score: 4.9 Sequence: AAGAACATATGTTCTT
Locus tag: lp_3023
Name: umuC Funciton: UV-damage repair protein
Locus tag: lp_3022
Name: lp_3022 Funciton: Conserved hypothetical protein |
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umuC
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UV-damage repair protein
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lp_3022
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Conserved hypothetical protein
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Position: -52
Score: 4.6 Sequence: ACGAACAGATGTTTTA
Locus tag: lp_0308
Name: srmB Funciton: DinG family ATP-dependent helicase
Locus tag: lp_0307
Name: lp_0307 Funciton: Conserved hypothetical protein
Locus tag: lp_0306
Name: lp_0306 Funciton: Conserved hypothetical protein |
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srmB
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DinG family ATP-dependent helicase
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lp_0307
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Conserved hypothetical protein
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lp_0306
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Conserved hypothetical protein
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Position: -85
Score: 4.8 Sequence: TTGAACGTATGTTCGT
Locus tag: lp_2280
Name: dinP Funciton: DNA polymerase IV (EC 2.7.7.7)
Locus tag: lp_2279
Name: nrnA Funciton: 3'-to-5' oligoribonuclease A
Locus tag: lp_2278
Name: rheB Funciton: Putative ATP-dependent DNA/RNA helicase |
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dinP
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DNA polymerase IV (EC 2.7.7.7)
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nrnA
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3'-to-5' oligoribonuclease A
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rheB
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Putative ATP-dependent DNA/RNA helicase
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |