Regulon of NrdR in Lactobacillus plantarum WCFS1
| Regulator type: | Transcription factor |
| TF locus tag: | lp_1511 |
| Regulator family: | NrdR |
| Regulation mode: | repressor |
| Biological process: | Deoxyribonucleotide biosynthesis |
| Effector: | Deoxyribonucleotides |
| Regulog: | NrdR - Lactobacillaceae |
| Statistics of regulated genes: | |
| - Genes | 8 |
| - Operons | 5 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By trascription factor - NrdR
- By taxonomy - Lactobacillaceae
- By TF family - NrdR
- By effector - Deoxyribonucleotides
- By pathway - Deoxyribonucleotide biosynthesis
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -80
Score: 5.5 Sequence: CTACTATATATAGTAT
Position: -49
Score: 4.4 Sequence: GCACTATCAATTGTAT
Locus tag: lp_2932
Name: nrdD Funciton: Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
Locus tag: lp_2931
Name: nrdG Funciton: Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4) |
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nrdD
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Ribonucleotide reductase of class III (anaerobic), large subunit (EC 1.17.4.2)
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nrdG
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Ribonucleotide reductase of class III (anaerobic), activating protein (EC 1.97.1.4)
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Position: -86
Score: 4.6 Sequence: ACCCTAGATGTTGTGT
Position: -54
Score: 4.7 Sequence: TCACCACATGTTGTAT
Locus tag: lp_0694
Name: nrdH Funciton: Glutaredoxin-like protein NrdH
Locus tag: lp_0693
Name: nrdE Funciton: Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1)
Locus tag: lp_0692
Name: nrdF Funciton: Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1) |
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nrdH
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Glutaredoxin-like protein NrdH
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nrdE
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Ribonucleotide reductase of class Ib (aerobic), alpha subunit (EC 1.17.4.1)
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nrdF
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Ribonucleotide reductase of class Ib (aerobic), beta subunit (EC 1.17.4.1)
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Position: -108
Score: 5.7 Sequence: ATACAATATATTGTGT
Position: -78
Score: 4.8 Sequence: ACACTACATGTAGTAG
Locus tag: lp_0259
Name: pnuN Funciton: NrdR-regulated deoxyribonucleotide transporter, PnuC-like |
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pnuN
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NrdR-regulated deoxyribonucleotide transporter, PnuC-like
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Position: -99
Score: 4.4 Sequence: TCACCAGATATTGCAT
Position: -67
Score: 5 Sequence: GTACAATATGTAGTGT
Locus tag: lp_1011
Name: dgk1 Funciton: Deoxyadenosine kinase (EC 2.7.1.76) / Deoxyguanosine kinase (EC 2.7.1.113) |
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dgk1
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Deoxyadenosine kinase (EC 2.7.1.76) / Deoxyguanosine kinase (EC 2.7.1.113)
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Position: -72
Score: 3.9 Sequence: AAAGTCTATATGGTAT
Position: -40
Score: 5.1 Sequence: ATACAATATATTGTGC
Locus tag: lp_1329
Name: dgk2 Funciton: Deoxyadenosine kinase (EC 2.7.1.76) / Deoxyguanosine kinase (EC 2.7.1.113) |
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dgk2
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Deoxyadenosine kinase (EC 2.7.1.76) / Deoxyguanosine kinase (EC 2.7.1.113)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |