Regulon of CcpA in Pediococcus pentosaceus ATCC 25745
| Regulator type: | Transcription factor |
| TF locus tag: | PEPE_1250 |
| Regulator family: | LacI |
| Regulation mode: | |
| Biological process: | Carbon catabolism |
| Effector: | HPr, phosphocarrier protein; Fructose-1,6-bisphosphate |
| Regulog: | CcpA - Lactobacillaceae |
| Statistics of regulated genes: | |
| - Genes | 83 |
| - Operons | 42 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Lactobacillaceae
- By trascription factor - CcpA
- By TF family - LacI
- By effector - HPr, phosphocarrier protein
- By effector - Fructose-1,6-bisphosphate
- By pathway - Carbon catabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -150
Score: 4.2 Sequence: TTGTAAGCGAATACAC
Position: -129
Score: 4.4 Sequence: ATGTCAACGCTTTTAT
Position: -107
Score: 4.7 Sequence: TTGAAAACGCTTTACA
Locus tag: PEPE_0185
Name: xynT Funciton: Na+/xyloside symporter
Locus tag: PEPE_0186
Name: xylR Funciton: Xylose repressor XylR, ROK family
Locus tag: PEPE_0187
Name: xylA Funciton: Xylose isomerase (EC 5.3.1.5)
Locus tag: PEPE_0188
Name: xylB Funciton: Xylulose kinase (EC 2.7.1.17) |
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xynT
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Na+/xyloside symporter
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xylR
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Xylose repressor XylR, ROK family
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xylA
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Xylose isomerase (EC 5.3.1.5)
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xylB
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Xylulose kinase (EC 2.7.1.17)
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Position: -103
Score: 4.3 Sequence: TTGATAGCCTTTTCAT
Locus tag: PEPE_0412
Name: guaA Funciton: GMP synthase (EC 6.3.5.2) |
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guaA
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GMP synthase (EC 6.3.5.2)
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Position: -65
Score: 4.9 Sequence: ATTAAAACGTTTTCAT
Locus tag: PEPE_1699
Name: rbsK Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: PEPE_1698
Name: rbsD Funciton: Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1)
Locus tag: PEPE_1697
Name: rbsU Funciton: Ribose uptake protein RbsU (TC 2.A.7.5) |
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rbsK
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Ribokinase (EC 2.7.1.15)
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rbsD
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Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1)
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rbsU
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Ribose uptake protein RbsU (TC 2.A.7.5)
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Position: -140
Score: 4.2 Sequence: ATATAAGCGTTTAATT
Locus tag: PEPE_1700
Name: rbsR Funciton: Ribose operon transcriptional regulator, LacI family |
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rbsR
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Ribose operon transcriptional regulator, LacI family
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Position: -84
Score: 4.2 Sequence: TTAAAAACGATTTATA
Position: -51
Score: 5 Sequence: TAGAAAGCGCTTTCTT
Locus tag: PEPE_1623
Name: glpK Funciton: Glycerol kinase (EC 2.7.1.30)
Locus tag: PEPE_1624
Name: glpD Funciton: Alpha-glycerophosphate oxidase (EC 1.1.3.21)
Locus tag: PEPE_1625
Name: glpF Funciton: Glycerol uptake facilitator protein |
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glpK
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Glycerol kinase (EC 2.7.1.30)
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glpD
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Alpha-glycerophosphate oxidase (EC 1.1.3.21)
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glpF
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Glycerol uptake facilitator protein
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Position: -38
Score: 4.6 Sequence: ACGAAAACGTTTTCAA
Locus tag: PEPE_1252
Name: spxB Funciton: Pyruvate oxidase (EC 1.2.3.3) |
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spxB
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Pyruvate oxidase (EC 1.2.3.3)
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Position: -75
Score: 4.9 Sequence: TTGTAAGCGGTTTTAT
Locus tag: PEPE_0144
Name: fbp Funciton: Fructose-1,6-bisphosphatase, Bacillus type (EC 3.1.3.11) |
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fbp
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Fructose-1,6-bisphosphatase, Bacillus type (EC 3.1.3.11)
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Position: -88
Score: 4.8 Sequence: GTGAAAGCGCTAACAT
Locus tag: PEPE_0697
Name: lrgA Funciton: Antiholin-like protein LrgA
Locus tag: PEPE_0698
Name: lrgB Funciton: LrgA-associated membrane protein LrgB |
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lrgA
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Antiholin-like protein LrgA
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lrgB
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LrgA-associated membrane protein LrgB
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Position: -21
Score: 4.3 Sequence: ATGAAAGGGGTTTTAT
Locus tag: PEPE_1334
Name: pmi Funciton: Mannose-6-phosphate isomerase (EC 5.3.1.8) |
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pmi
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Mannose-6-phosphate isomerase (EC 5.3.1.8)
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Position: -199
Score: 4.6 Sequence: TTAGAAACGCTTACAT
Position: -56
Score: 4.7 Sequence: TAGCAAGCGCTTACAA
Locus tag: PEPE_1804
Name: treP Funciton: Trehalose-specific PTS system, EIIABC component (EC 2.7.1.69) |
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treP
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Trehalose-specific PTS system, EIIABC component (EC 2.7.1.69)
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Position: -177
Score: 4.7 Sequence: TTGTAAGCGCTTGCTA
Position: -34
Score: 4.6 Sequence: ATGTAAGCGTTTCTAA
Locus tag: PEPE_1805
Name: treR Funciton: Trehalose utilization transcriptional regulator TreR, GntR family
Locus tag: PEPE_1806
Name: treA Funciton: Trehalose-6-phosphate hydrolase (EC 3.2.1.93) |
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treR
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Trehalose utilization transcriptional regulator TreR, GntR family
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treA
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Trehalose-6-phosphate hydrolase (EC 3.2.1.93)
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Position: -146
Score: 4.5 Sequence: TTGAAAGCGTTTTTTG
Locus tag: PEPE_1518
Name: manL Funciton: Mannose-specific PTS system, IIAB component (EC 2.7.1.69)
Locus tag: PEPE_1517
Name: manM Funciton: Mannose-specific PTS system, IIC component (EC 2.7.1.69)
Locus tag: PEPE_1516
Name: manN Funciton: Mannose-specific PTS system, IID component (EC 2.7.1.69)
Locus tag: PEPE_1515
Name: manO Funciton: Predicted regulator of the mannose operon, ManO |
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manL
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Mannose-specific PTS system, IIAB component (EC 2.7.1.69)
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manM
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Mannose-specific PTS system, IIC component (EC 2.7.1.69)
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manN
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Mannose-specific PTS system, IID component (EC 2.7.1.69)
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manO
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Predicted regulator of the mannose operon, ManO
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Position: -231
Score: 4.3 Sequence: TAGCAAGCGCTTTCAC
Position: -167
Score: 4.9 Sequence: TTTAAAACGTTTTCAT
Locus tag: PEPE_1632
Name: ycbB Funciton: Signal transduction response regulator |
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ycbB
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Signal transduction response regulator
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Position: -51
Score: 4.5 Sequence: ATGAAAAGGCTTTCTA
Locus tag: PEPE_0106
Name: bglA Funciton: 6-phospho-beta-glucosidase (EC 3.2.1.86) |
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bglA
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6-phospho-beta-glucosidase (EC 3.2.1.86)
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Position: -204
Score: 4.7 Sequence: TTGTATCCGTTTTCAT
Locus tag: PEPE_0511
Name: rafR Funciton: Raffinose utilization transcriptional regulator RafR, AraC family |
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rafR
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Raffinose utilization transcriptional regulator RafR, AraC family
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Position: -39
Score: 4.4 Sequence: ATGAAAGCGCTTCATA
Locus tag: PEPE_0968
Name: malT Funciton: Predicted maltose/maltodextrin permease
Locus tag: PEPE_0967
Name: mapA Funciton: Maltose phosphorylase (EC 2.4.1.8) / Trehalose phosphorylase (EC 2.4.1.64)
Locus tag: PEPE_0966
Name: pgmB Funciton: Beta-phosphoglucomutase (EC 5.4.2.6) |
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malT
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Predicted maltose/maltodextrin permease
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mapA
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Maltose phosphorylase (EC 2.4.1.8) / Trehalose phosphorylase (EC 2.4.1.64)
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pgmB
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Beta-phosphoglucomutase (EC 5.4.2.6)
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Position: -141
Score: 4.7 Sequence: TTGAATTCGCTTTCAT
Locus tag: PEPE_1777
Name: lhv_0924 Funciton: Predicted transcriptional regulator, GntR family |
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lhv_0924
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Predicted transcriptional regulator, GntR family
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Position: -116
Score: 4 Sequence: AATAAAGCACTTACAT
Locus tag: PEPE_1093
Name: pfk Funciton: 6-phosphofructokinase (EC 2.7.1.11)
Locus tag: PEPE_1092
Name: pyk Funciton: Pyruvate kinase (EC 2.7.1.40) |
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pfk
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6-phosphofructokinase (EC 2.7.1.11)
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pyk
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Pyruvate kinase (EC 2.7.1.40)
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Position: -104
Score: 4.1 Sequence: ATAAAAACGTTTAACT
Position: -71
Score: 4.7 Sequence: TTGTAAACGGATACAT
Position: -15
Score: 4 Sequence: AAGAAGGCGTTTAAAA
Locus tag: PEPE_0276
Name: dhaT Funciton: 1,3-propanediol dehydrogenase (EC 1.1.1.202) |
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dhaT
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1,3-propanediol dehydrogenase (EC 1.1.1.202)
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Position: -75
Score: 4.8 Sequence: TTGCAAACGCTTTCTT
Locus tag: PEPE_0182
Name: adhX Funciton: Zn conatining alcohol dehydrogenase |
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adhX
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Zn conatining alcohol dehydrogenase
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Position: -55
Score: 4.8 Sequence: ATGAAAGCGTATTCTT
Locus tag: PEPE_1821
Name: gabD Funciton: Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24); Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16) |
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gabD
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Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24); Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
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Position: -109
Score: 4.6 Sequence: ATGAATACGTTATCAA
Locus tag: PEPE_1251
Name: pepQ Funciton: Xaa-Pro dipeptidase (EC 3.4.13.9) |
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pepQ
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Xaa-Pro dipeptidase (EC 3.4.13.9)
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Position: -127
Score: 4 Sequence: ATGTAAGGGCTTGCTT
Locus tag: PEPE_0609
Name: ptsH Funciton: Phosphotransferase system, HPr-related protein
Locus tag: PEPE_0610
Name: ptsI Funciton: Phosphoenolpyruvate-protein kinase, PTS system component (EC 2.7.3.9) |
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ptsH
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Phosphotransferase system, HPr-related protein
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ptsI
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Phosphoenolpyruvate-protein kinase, PTS system component (EC 2.7.3.9)
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Position: -213
Score: 4.3 Sequence: ATGCAAGCGCTTTACA
Position: -59
Score: 4.6 Sequence: GTGTAAGCGGTTTTAT
Locus tag: PEPE_0519
Name: scrB Funciton: Sucrose-6-phosphate hydrolase (EC 3.2.1.26)
Locus tag: PEPE_0520
Name: scrR Funciton: Sucrose operon repressor ScrR, LacI family
Locus tag: PEPE_0521
Name: agl4 Funciton: Oligo-1,6-glucosidase (EC 3.2.1.10) |
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scrB
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Sucrose-6-phosphate hydrolase (EC 3.2.1.26)
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scrR
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Sucrose operon repressor ScrR, LacI family
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agl4
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Oligo-1,6-glucosidase (EC 3.2.1.10)
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Position: -45
Score: 4.7 Sequence: ATGAAAGCGGTATCTT
Locus tag: PEPE_0112
Name: yghZ Funciton: Predicted oxidoreductase, aryl-alcohol dehydrogenase related |
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yghZ
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Predicted oxidoreductase, aryl-alcohol dehydrogenase related
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Position: -58
Score: 4.5 Sequence: TCGTAAGCGGTTTCAT
Locus tag: PEPE_0281
Name: pts20B Funciton: PTS system, cellobiose-specific IIB component (EC 2.7.1.69)
Locus tag: PEPE_0282
Name: pts20A Funciton: PTS system, cellobiose-specific IIA component (EC 2.7.1.69)
Locus tag: PEPE_0283
Name: bglA Funciton: 6-phospho-beta-glucosidase (EC 3.2.1.86) |
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pts20B
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PTS system, cellobiose-specific IIB component (EC 2.7.1.69)
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pts20A
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PTS system, cellobiose-specific IIA component (EC 2.7.1.69)
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bglA
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6-phospho-beta-glucosidase (EC 3.2.1.86)
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Position: -35
Score: 4.7 Sequence: AAGAAAGCGGTTACTT
Locus tag: PEPE_1360
Name: gntP Funciton: H+/gluconate symporter related permease |
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gntP
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H+/gluconate symporter related permease
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Position: -212
Score: 4.3 Sequence: ATAAAACCGCTTACAC
Position: -157
Score: 4 Sequence: ATGTCAGCGTTTCAAA
Position: -58
Score: 4.1 Sequence: TGTAAAGCGCTTGCAT
Locus tag: PEPE_0518
Name: scrA Funciton: Sucrose-specific PTS system, IIABC component (EC 2.7.1.69) |
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scrA
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Sucrose-specific PTS system, IIABC component (EC 2.7.1.69)
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Position: -107
Score: 4 Sequence: TTTAAAACATTTTAAA
Position: -40
Score: 4.8 Sequence: TAGAAAGCGCTTCCAT
Locus tag: PEPE_1774
Name: lplA1 Funciton: Lipoate-protein ligase A
Locus tag: PEPE_1773
Name: pdhA Funciton: Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E1 component alpha-subunit
Locus tag: PEPE_1772
Name: pdhB Funciton: Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E1 component beta-subunit
Locus tag: PEPE_1771
Name: pdhC Funciton: Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E2 component
Locus tag: PEPE_1770
Name: pdhD Funciton: Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E3 component |
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lplA1
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Lipoate-protein ligase A
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pdhA
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Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E1 component alpha-subunit
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pdhB
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Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E1 component beta-subunit
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pdhC
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Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E2 component
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pdhD
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Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E3 component
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Position: -41
Score: 4.8 Sequence: TTGTAAGCGTTTTATA
Locus tag: PEPE_0205
Name: lacL Funciton: Beta-galactosidase large subunit (EC 3.2.1.23)
Locus tag: PEPE_0204
Name: lacM Funciton: Beta-galactosidase small subunit (EC 3.2.1.23) |
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lacL
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Beta-galactosidase large subunit (EC 3.2.1.23)
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lacM
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Beta-galactosidase small subunit (EC 3.2.1.23)
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Position: -181
Score: 5.1 Sequence: TTGTAAGCGTTATCAT
Locus tag: PEPE_0479
Name: lp_0827 Funciton: Conserved hypothetical protein |
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lp_0827
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Conserved hypothetical protein
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Position: -6
Score: 4.3 Sequence: ATGAAAGTGCTTACAG
Locus tag: PEPE_1166
Name: fruR Funciton: Fructose utilization transcriptional regulator FruR, DeoR family
Locus tag: PEPE_1165
Name: fruB Funciton: 1-phosphofructokinase (EC 2.7.1.56)
Locus tag: PEPE_1164
Name: fruA Funciton: Fructose-specific PTS system, IIABC component (EC 2.7.1.69) |
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fruR
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Fructose utilization transcriptional regulator FruR, DeoR family
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fruB
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1-phosphofructokinase (EC 2.7.1.56)
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fruA
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Fructose-specific PTS system, IIABC component (EC 2.7.1.69)
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Position: -69
Score: 4.6 Sequence: TTGATAACGTATTCAT
Locus tag: PEPE_1250
Name: ccpA Funciton: Carbon catabolism global transcriptional regulator CcpA, LacI family |
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ccpA
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Carbon catabolism global transcriptional regulator CcpA, LacI family
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Position: -63
Score: 4.8 Sequence: TTGTAATCGCTTTCTA
Locus tag: PEPE_1662
Name: dhaK Funciton: Phosphoenolpyruvate-dihydroxyacetone phosphotransferase (EC 2.7.1.121), dihydroxyacetone binding subunit DhaK
Locus tag: PEPE_1661
Name: dhaL Funciton: Phosphoenolpyruvate-dihydroxyacetone phosphotransferase (EC 2.7.1.121), ADP-binding subunit DhaL
Locus tag: PEPE_1660
Name: dhaM Funciton: Phosphoenolpyruvate-dihydroxyacetone phosphotransferase (EC 2.7.1.121), subunit DhaM; DHA-specific IIA component |
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dhaK
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Phosphoenolpyruvate-dihydroxyacetone phosphotransferase (EC 2.7.1.121), dihydroxyacetone binding subunit DhaK
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dhaL
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Phosphoenolpyruvate-dihydroxyacetone phosphotransferase (EC 2.7.1.121), ADP-binding subunit DhaL
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dhaM
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Phosphoenolpyruvate-dihydroxyacetone phosphotransferase (EC 2.7.1.121), subunit DhaM; DHA-specific IIA component
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Position: -46
Score: 4.7 Sequence: ATGAAAACGGATACAA
Locus tag: PEPE_0512
Name: lacS Funciton: Lactose and galactose permease |
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lacS
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Lactose and galactose permease
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Position: -83
Score: 4.5 Sequence: TTGGAAACGCTTTATT
Locus tag: PEPE_0189
Name: ptcA Funciton: Putrescine carbamoyltransferase (EC 2.1.3.6)
Locus tag: PEPE_0190
Name: aguD Funciton: Agmatine:putrescine antiporter
Locus tag: PEPE_0191
Name: aguA1 Funciton: Agmatine iminohydrolase (EC 3.5.3.12)
Locus tag: PEPE_0192
Name: arcC2 Funciton: Carbamate kinase (EC 2.7.2.2)
Locus tag: PEPE_0193
Name: aguA2 Funciton: Agmatine iminohydrolase (EC 3.5.3.12)
Locus tag: PEPE_0194
Name: LVIS_2205 Funciton: Transcriptional regulator, RpiR family |
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ptcA
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Putrescine carbamoyltransferase (EC 2.1.3.6)
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aguD
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Agmatine:putrescine antiporter
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aguA1
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Agmatine iminohydrolase (EC 3.5.3.12)
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arcC2
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Carbamate kinase (EC 2.7.2.2)
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aguA2
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Agmatine iminohydrolase (EC 3.5.3.12)
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LVIS_2205
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Transcriptional regulator, RpiR family
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Position: -77
Score: 4.1 Sequence: AAAAAAACGCTTTCTG
Locus tag: PEPE_0446
Name: null Funciton: Phosphoglucomutase (EC 5.4.2.2) |
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Phosphoglucomutase (EC 5.4.2.2)
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Position: -76
Score: 4.3 Sequence: AAGAAAGCCTTTACAT
Locus tag: PEPE_1763
Name: lacX Funciton: Aldose 1-epimerase |
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lacX
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Aldose 1-epimerase
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Position: -119
Score: 5 Sequence: ATGAAAACGTTTTAAA
Position: -55
Score: 4.5 Sequence: GTGAAAGCGCTTGCTA
Locus tag: PEPE_1631
Name: arcB Funciton: Ornithine carbamoyltransferase (EC 2.1.3.3)
Locus tag: PEPE_1630
Name: arcC Funciton: Carbamate kinase (EC 2.7.2.2)
Locus tag: PEPE_1629
Name: arcA Funciton: Arginine deiminase (EC 3.5.3.6)
Locus tag: PEPE_1628
Name: arcD Funciton: Arginine/ornithine antiporter ArcD |
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arcB
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Ornithine carbamoyltransferase (EC 2.1.3.3)
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arcC
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Carbamate kinase (EC 2.7.2.2)
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arcA
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Arginine deiminase (EC 3.5.3.6)
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arcD
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Arginine/ornithine antiporter ArcD
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Position: -48
Score: 4.9 Sequence: ATGAATACGCTTTCAA
Locus tag: PEPE_0162
Name: araE Funciton: Arabinose-proton symporter
Locus tag: PEPE_0163
Name: araB Funciton: Ribulokinase (EC 2.7.1.16)
Locus tag: PEPE_0164
Name: araD Funciton: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)
Locus tag: PEPE_0165
Name: araA Funciton: L-arabinose isomerase (EC 5.3.1.4) |
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araE
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Arabinose-proton symporter
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araB
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Ribulokinase (EC 2.7.1.16)
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araD
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L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)
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araA
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L-arabinose isomerase (EC 5.3.1.4)
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Position: -34
Score: 4.8 Sequence: ATGAAAGCGAATTCAA
Locus tag: PEPE_1776
Name: bglB Funciton: Beta-glucosidase (EC 3.2.1.21); 6-phospho-beta-glucosidase (EC 3.2.1.86)
Locus tag: PEPE_1775
Name: LBA0884 Funciton: PTS system, IIC component |
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bglB
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Beta-glucosidase (EC 3.2.1.21); 6-phospho-beta-glucosidase (EC 3.2.1.86)
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LBA0884
|
PTS system, IIC component
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Position: -81
Score: 4.7 Sequence: TTATAAGCGTTTTAAT
Position: -66
Score: 4.1 Sequence: TTGTAAGCGGTTCACA
Locus tag: PEPE_1619
Name: hcaD Funciton: NADH peroxidase (EC 1.11.1.1) |
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hcaD
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NADH peroxidase (EC 1.11.1.1)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |