Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of CcpA in Lactobacillus sakei subsp. sakei 23K

Properties
Regulator type: Transcription factor
TF locus tag: LSA0415
Regulator family: LacI
Regulation mode:
Biological process: Carbon catabolism
Effector: HPr, phosphocarrier protein; Fructose-1,6-bisphosphate
Regulog: CcpA - Lactobacillaceae
Statistics of regulated genes:
- Genes 62
- Operons 29
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 561 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -95
Score: 4.1
Sequence: ATAAAAGGGCTTTAAT
Locus tag: LSA1170
Name: glpF2
Funciton: Glycerol uptake facilitator protein
glpF2
Glycerol uptake facilitator protein

Position: -39
Score: 4.8
Sequence: ATGGAAACGATTTCAA
Locus tag: LSA1702
Name: adhA
Funciton: Alcohol dehydrogenase, Zn-dependent (EC 1.1.1.1)
adhA
Alcohol dehydrogenase, Zn-dependent (EC 1.1.1.1)

Position: -65
Score: 4.4
Sequence: TTTAAAGCGCTTTTTT
Locus tag: LSA1685
Name: rpiA
Funciton: Ribose 5-phosphate isomerase A (EC 5.3.1.6)
rpiA
Ribose 5-phosphate isomerase A (EC 5.3.1.6)

Position: -114
Score: 4.3
Sequence: TGTAAACCGTTTTCAA
Locus tag: LSA0200
Name: rbsU
Funciton: Ribose uptake protein RbsU (TC 2.A.7.5)
Locus tag: LSA0201
Name: rbsD
Funciton: Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1)
Locus tag: LSA0202
Name: rbsK
Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: LSA0203
Name: rbsR
Funciton: Ribose operon transcriptional regulator, LacI family
rbsU
Ribose uptake protein RbsU (TC 2.A.7.5)
rbsD
Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1)
rbsK
Ribokinase (EC 2.7.1.15)
rbsR
Ribose operon transcriptional regulator, LacI family

Position: -44
Score: 3.8
Sequence: ATGTAACCGTTTAGCA
Locus tag: LSA0138
Name: coaA
Funciton: Pantothenate kinase (EC 2.7.1.33)
Locus tag: LSA0139
Name: guaA
Funciton: GMP synthase (EC 6.3.5.2)
coaA
Pantothenate kinase (EC 2.7.1.33)
guaA
GMP synthase (EC 6.3.5.2)

Position: -71
Score: 4.1
Sequence: TTTGTAACGCTTACAA
Locus tag: LSA1830
Name: spxB
Funciton: Pyruvate oxidase (EC 1.2.3.3)
spxB
Pyruvate oxidase (EC 1.2.3.3)

Position: -89
Score: 4.8
Sequence: TTGTAATCGATTTCAA
Locus tag: LSA1188
Name: spxB
Funciton: Pyruvate oxidase (EC 1.2.3.3)
spxB
Pyruvate oxidase (EC 1.2.3.3)

Position: -74
Score: 3.9
Sequence: TGAAAAGCGTTCTCAT
Locus tag: LSA1113
Name: sufC
Funciton: Iron-sulfur cluster assembly ATPase protein
Locus tag: LSA1112
Name: sufD
Funciton: Iron-sulfur cluster assembly protein
Locus tag: LSA1111
Name: sufS
Funciton: Cysteine desulfurase (EC 2.8.1.7), SufS subfamily
Locus tag: LSA1110
Name: sufA
Funciton: Fe-S cluster formation protein, NifU-like
Locus tag: LSA1109
Name: sufB
Funciton: Fe-S cluster assembly ABC-type transport system, permease component
sufC
Iron-sulfur cluster assembly ATPase protein
sufD
Iron-sulfur cluster assembly protein
sufS
Cysteine desulfurase (EC 2.8.1.7), SufS subfamily
sufA
Fe-S cluster formation protein, NifU-like
sufB
Fe-S cluster assembly ABC-type transport system, permease component

Position: -130
Score: 4
Sequence: ATGAAAACCTTTACAC
Position: -40
Score: 4.3
Sequence: TTGTAAACGATGACAT
Locus tag: LSA1048
Name: fruR
Funciton: Fructose utilization transcriptional regulator FruR, DeoR family
Locus tag: LSA1049
Name: fruB
Funciton: 1-phosphofructokinase (EC 2.7.1.56)
Locus tag: LSA1050
Name: fruA
Funciton: Fructose-specific PTS system, IIABC component (EC 2.7.1.69)
fruR
Fructose utilization transcriptional regulator FruR, DeoR family
fruB
1-phosphofructokinase (EC 2.7.1.56)
fruA
Fructose-specific PTS system, IIABC component (EC 2.7.1.69)

Position: -20
Score: 4.3
Sequence: ATGAAAGGGGTTTTAT
Locus tag: LSA0934
Name: lplA1
Funciton: Lipoate-protein ligase A
lplA1
Lipoate-protein ligase A

Position: -115
Score: 4
Sequence: TGTAAAACGCTTGCAT
Locus tag: LSA1085
Name: pdhA
Funciton: Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E1 component alpha-subunit
Locus tag: LSA1084
Name: pdhB
Funciton: Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E1 component beta-subunit
Locus tag: LSA1083
Name: pdhC
Funciton: Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E2 component
Locus tag: LSA1082
Name: pdhD
Funciton: Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E3 component
pdhA
Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E1 component alpha-subunit
pdhB
Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E1 component beta-subunit
pdhC
Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E2 component
pdhD
Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E3 component

Position: -105
Score: 4.4
Sequence: TTGTAAACGGTTCAAA
Locus tag: LSA1200
Name: treP
Funciton: Trehalose-specific PTS system, EIIABC component (EC 2.7.1.69)
Locus tag: LSA1199
Name: treA
Funciton: Trehalose-6-phosphate hydrolase (EC 3.2.1.93)
treP
Trehalose-specific PTS system, EIIABC component (EC 2.7.1.69)
treA
Trehalose-6-phosphate hydrolase (EC 3.2.1.93)

Position: -145
Score: 4.2
Sequence: GTAAAAGCGCTTTCTG
Position: -82
Score: 4.4
Sequence: TTTGAACCGTTTACAA
Locus tag: LSA1201
Name: treR
Funciton: Trehalose utilization transcriptional regulator TreR, GntR family
treR
Trehalose utilization transcriptional regulator TreR, GntR family

Position: -99
Score: 4.1
Sequence: ACGAAATCGCTTTAAA
Locus tag: LSA1146
Name: pmi
Funciton: Mannose-6-phosphate isomerase (EC 5.3.1.8)
pmi
Mannose-6-phosphate isomerase (EC 5.3.1.8)

Position: -147
Score: 4.2
Sequence: TTTGTAACGCTTTCAT
Position: -55
Score: 4.1
Sequence: CGGTAAGCGTTATCAT
Locus tag: LSA0122
Name: dhaT
Funciton: 1,3-propanediol dehydrogenase (EC 1.1.1.202)
dhaT
1,3-propanediol dehydrogenase (EC 1.1.1.202)

Position: -66
Score: 4.3
Sequence: TTGTAAACGATTCTAA
Locus tag: LSA0542
Name: adhX
Funciton: Zn conatining alcohol dehydrogenase
adhX
Zn conatining alcohol dehydrogenase

Position: -74
Score: 4.5
Sequence: TTACAAACGGTTTCAA
Locus tag: LSA0379
Name: adhE
Funciton: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
adhE
Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)

Position: -120
Score: 4.1
Sequence: ATGCAAGCGGTTTACA
Locus tag: LSA0414
Name: pepQ
Funciton: Xaa-Pro dipeptidase (EC 3.4.13.9)
pepQ
Xaa-Pro dipeptidase (EC 3.4.13.9)

Position: -188
Score: 4.5
Sequence: TTGTAAACGCTTTTCA
Position: -163
Score: 4.3
Sequence: ATACAACCGTTTACAT
Position: -59
Score: 4.1
Sequence: TATCAAACGTTTACAT
Locus tag: LSA1793
Name: scrB
Funciton: Sucrose-6-phosphate hydrolase (EC 3.2.1.26)
Locus tag: LSA1794
Name: scrR
Funciton: Sucrose operon repressor ScrR, LacI family
scrB
Sucrose-6-phosphate hydrolase (EC 3.2.1.26)
scrR
Sucrose operon repressor ScrR, LacI family

Position: -45
Score: 4.5
Sequence: ATGTAACCGATTGCAT
Locus tag: LSA0260
Name: yghZ
Funciton: Predicted oxidoreductase, aryl-alcohol dehydrogenase related
yghZ
Predicted oxidoreductase, aryl-alcohol dehydrogenase related

Position: -36
Score: 4.5
Sequence: ATGTAAACGCAAACAA
Locus tag: LSA0299
Name: gntP
Funciton: H+/gluconate symporter related permease
gntP
H+/gluconate symporter related permease

Position: -183
Score: 4.2
Sequence: ATGTAAACGTTTGATA
Position: -54
Score: 4.5
Sequence: TGAAAAGCGTTTACAA
Locus tag: LSA1792
Name: scrA
Funciton: Sucrose-specific PTS system, IIABC component (EC 2.7.1.69)
scrA
Sucrose-specific PTS system, IIABC component (EC 2.7.1.69)

Position: -136
Score: 4.2
Sequence: AGTAAAGCGTTTTAAA
Position: -57
Score: 4.6
Sequence: TTGTTAGCGTTTTTAT
Locus tag: LSA0449
Name: manL
Funciton: Mannose-specific PTS system, IIAB component (EC 2.7.1.69)
Locus tag: LSA0450
Name: manM
Funciton: Mannose-specific PTS system, IIC component (EC 2.7.1.69)
Locus tag: LSA0451
Name: manN
Funciton: Mannose-specific PTS system, IID component (EC 2.7.1.69)
Locus tag: LSA0452
Name: manO
Funciton: Predicted regulator of the mannose operon, ManO
manL
Mannose-specific PTS system, IIAB component (EC 2.7.1.69)
manM
Mannose-specific PTS system, IIC component (EC 2.7.1.69)
manN
Mannose-specific PTS system, IID component (EC 2.7.1.69)
manO
Predicted regulator of the mannose operon, ManO

Position: -78
Score: 4.7
Sequence: TTGAAACCGTTTTATA
Locus tag: LSA1860
Name: araE
Funciton: Arabinose-proton symporter
Locus tag: LSA1859
Name: araB
Funciton: Ribulokinase (EC 2.7.1.16)
Locus tag: LSA1857
Name: araD
Funciton: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)
Locus tag: LSA1856
Name: araA
Funciton: L-arabinose isomerase (EC 5.3.1.4)
araE
Arabinose-proton symporter
araB
Ribulokinase (EC 2.7.1.16)
araD
L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)
araA
L-arabinose isomerase (EC 5.3.1.4)

Position: -37
Score: 4.9
Sequence: ATGAAACCGTTTTAAT
Locus tag: LSA1711
Name: lacL
Funciton: Beta-galactosidase large subunit (EC 3.2.1.23)
Locus tag: LSA1710
Name: lacM
Funciton: Beta-galactosidase small subunit (EC 3.2.1.23)
lacL
Beta-galactosidase large subunit (EC 3.2.1.23)
lacM
Beta-galactosidase small subunit (EC 3.2.1.23)

Position: -174
Score: 4.8
Sequence: TTGACAACGCTTACAT
Locus tag: LSA0428
Name: lp_0827
Funciton: Conserved hypothetical protein
lp_0827
Conserved hypothetical protein

Position: -42
Score: 4.3
Sequence: TTGTAAGCGTAGTCAA
Locus tag: LSA0067
Name: ptcA
Funciton: Putrescine carbamoyltransferase (EC 2.1.3.6)
Locus tag: LSA0068
Name: aguD
Funciton: Agmatine:putrescine antiporter
Locus tag: LSA0069
Name: aguD
Funciton: Agmatine:putrescine antiporter
Locus tag: LSA0070
Name: aguA1
Funciton: Agmatine iminohydrolase (EC 3.5.3.12)
Locus tag: LSA0071
Name: arcC2
Funciton: Carbamate kinase (EC 2.7.2.2)
Locus tag: LSA0072
Name: aguA2
Funciton: Agmatine iminohydrolase (EC 3.5.3.12)
Locus tag: LSA0073
Name: LVIS_2205
Funciton: Transcriptional regulator, RpiR family
ptcA
Putrescine carbamoyltransferase (EC 2.1.3.6)
aguD
Agmatine:putrescine antiporter
aguD
Agmatine:putrescine antiporter
aguA1
Agmatine iminohydrolase (EC 3.5.3.12)
arcC2
Carbamate kinase (EC 2.7.2.2)
aguA2
Agmatine iminohydrolase (EC 3.5.3.12)
LVIS_2205
Transcriptional regulator, RpiR family

Position: -43
Score: 4.3
Sequence: AAGGAAACGTTTTCCA
Locus tag: LSA0649
Name: glpK
Funciton: Glycerol kinase (EC 2.7.1.30)
Locus tag: LSA0650
Name: glpD
Funciton: Alpha-glycerophosphate oxidase (EC 1.1.3.21)
Locus tag: LSA0651
Name: glpF
Funciton: Glycerol uptake facilitator protein
glpK
Glycerol kinase (EC 2.7.1.30)
glpD
Alpha-glycerophosphate oxidase (EC 1.1.3.21)
glpF
Glycerol uptake facilitator protein

Position: -31
Score: 4.5
Sequence: ATGAAAGCGATTAATA
Locus tag: LSA0764
Name: galK
Funciton: Galactokinase (EC 2.7.1.6)
Locus tag: LSA0765
Name: galE
Funciton: UDP-glucose 4-epimerase (EC 5.1.3.2)
Locus tag: LSA0766
Name: galT
Funciton: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10)
Locus tag: LSA0767
Name: galM
Funciton: Aldose 1-epimerase (EC 5.1.3.3)
galK
Galactokinase (EC 2.7.1.6)
galE
UDP-glucose 4-epimerase (EC 5.1.3.2)
galT
Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10)
galM
Aldose 1-epimerase (EC 5.1.3.3)
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