Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of CcpA in Lactobacillus fermentum IFO 3956

Properties
Regulator type: Transcription factor
TF locus tag: LAF_0539
Regulator family: LacI
Regulation mode:
Biological process: Carbon catabolism
Effector: HPr, phosphocarrier protein; Fructose-1,6-bisphosphate
Regulog: CcpA - Lactobacillaceae
Statistics of regulated genes:
- Genes 51
- Operons 30
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 561 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -158
Score: 4.3
Sequence: TAGCAAACGCTTGCAT
Position: -103
Score: 4.5
Sequence: TTGCAACCGCTTTCCT
Locus tag: LAF_1738
Name: rbsK
Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: LAF_1737
Name: rbsD
Funciton: Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1)
Locus tag: LAF_1736
Name: rbsP
Funciton: Predicted ribose permease
rbsK
Ribokinase (EC 2.7.1.15)
rbsD
Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1)
rbsP
Predicted ribose permease

Position: -35
Score: 4
Sequence: ATGTAAGGGCTATCCA
Locus tag: LAF_1646
Name: coaA
Funciton: Pantothenate kinase (EC 2.7.1.33)
coaA
Pantothenate kinase (EC 2.7.1.33)

Position: -96
Score: 4.6
Sequence: GTGAAAACGGTTACTT
Locus tag: LAF_0739
Name: nplT
Funciton: Neopullulanase (EC 3.2.1.135)
Locus tag: LAF_0738
Name: melB2
Funciton: Sugar transport protein
nplT
Neopullulanase (EC 3.2.1.135)
melB2
Sugar transport protein

Position: -91
Score: 4.3
Sequence: TTGTAACCGGTTTACA
Locus tag: LAF_1689
Name: rbsK
Funciton: Ribokinase (EC 2.7.1.15)
rbsK
Ribokinase (EC 2.7.1.15)

Position: -158
Score: 4.3
Sequence: TAGCAAACGCTTGCAT
Position: -103
Score: 4.5
Sequence: TTGCAACCGCTTTCCT
Locus tag: LAF_1738
Name: rbsK
Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: LAF_1737
Name: rbsD
Funciton: Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1)
rbsK
Ribokinase (EC 2.7.1.15)
rbsD
Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1)

Position: -119
Score: 4.8
Sequence: ATGAAACCGGTTTAAA
Locus tag: LAF_1823
Name: argR
Funciton: Arginine metabolism regulator ArgR
argR
Arginine metabolism regulator ArgR

Position: -63
Score: 4.4
Sequence: GAGTTAGCGCTTTCAT
Locus tag: LAF_1686
Name: pgi
Funciton: Glucose-6-phosphate isomerase (EC 5.3.1.9)
pgi
Glucose-6-phosphate isomerase (EC 5.3.1.9)

Position: -40
Score: 4.6
Sequence: TGGAAAACGCTTACTA
Locus tag: LAF_1662
Name: galM
Funciton: Aldose 1-epimerase (EC 5.1.3.3); Galactose mutarotase and related enzymes
galM
Aldose 1-epimerase (EC 5.1.3.3); Galactose mutarotase and related enzymes

Position: -82
Score: 4.6
Sequence: TAGTAACCGCTTTTAT
Locus tag: LAF_0297
Name: ycbB
Funciton: Signal transduction response regulator
ycbB
Signal transduction response regulator

Position: -125
Score: 4.5
Sequence: AAGAAACCGTTTACAG
Locus tag: LAF_0868
Name: pyk
Funciton: Pyruvate kinase (EC 2.7.1.40)
pyk
Pyruvate kinase (EC 2.7.1.40)

Position: -39
Score: 4.7
Sequence: ATGGAAGCGTATTCAA
Locus tag: LAF_0741
Name: dhaT
Funciton: 1,3-propanediol dehydrogenase (EC 1.1.1.202)
dhaT
1,3-propanediol dehydrogenase (EC 1.1.1.202)

Position: -31
Score: 4.6
Sequence: ATGTAAGCGCTACCAA
Locus tag: LAF_0797
Name: adhX
Funciton: Zn conatining alcohol dehydrogenase
adhX
Zn conatining alcohol dehydrogenase

Position: -197
Score: 4.7
Sequence: TTGAAAACGCTTTCTC
Locus tag: LAF_0277
Name: adhE
Funciton: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
adhE
Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)

Position: -62
Score: 4.3
Sequence: GAAAAAGCGGTTACAA
Locus tag: LAF_0045
Name: gabD
Funciton: Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24); Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
gabD
Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24); Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)

Position: -119
Score: 4.3
Sequence: TTTGAACCGGTTACAT
Position: -73
Score: 4.2
Sequence: ATGATAACGGTTTATA
Locus tag: LAF_1735
Name: ptsI
Funciton: Phosphoenolpyruvate-protein kinase, PTS system component (EC 2.7.3.9)
ptsI
Phosphoenolpyruvate-protein kinase, PTS system component (EC 2.7.3.9)

Position: -244
Score: 4.2
Sequence: ATGTAACGGCTTTCTT
Position: -169
Score: 4.5
Sequence: ATGTAAGCGGTAACTT
Locus tag: LAF_1140
Name: pdhA
Funciton: Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E1 component alpha-subunit
Locus tag: LAF_1139
Name: pdhB
Funciton: Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E1 component beta-subunit
Locus tag: LAF_1138
Name: pdhC
Funciton: Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E2 component
Locus tag: LAF_1137
Name: pdhD
Funciton: Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E3 component
Locus tag: LAF_1136
Name: lplA1
Funciton: Lipoate-protein ligase A
pdhA
Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E1 component alpha-subunit
pdhB
Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E1 component beta-subunit
pdhC
Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E2 component
pdhD
Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E3 component
lplA1
Lipoate-protein ligase A

Position: -111
Score: 4.6
Sequence: TTGAAAACGATTTCGT
Position: -65
Score: 5.4
Sequence: TTGAAAACGTTTTCAT
Locus tag: LAF_0998
Name: mmgB
Funciton: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
mmgB
3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)

Position: -126
Score: 4.4
Sequence: TTGGCAGCGATTTCAA
Position: -57
Score: 4.5
Sequence: AGAAAAGCGCTTACAA
Locus tag: LAF_1578
Name: scrA
Funciton: Sucrose-specific PTS system, IIABC component (EC 2.7.1.69)
scrA
Sucrose-specific PTS system, IIABC component (EC 2.7.1.69)

Position: -48
Score: 5
Sequence: TTGAAACCGTTATCAT
Locus tag: LAF_0247
Name: lacL
Funciton: Beta-galactosidase large subunit (EC 3.2.1.23)
Locus tag: LAF_0248
Name: lacM
Funciton: Beta-galactosidase small subunit (EC 3.2.1.23)
lacL
Beta-galactosidase large subunit (EC 3.2.1.23)
lacM
Beta-galactosidase small subunit (EC 3.2.1.23)

Position: -92
Score: 4.2
Sequence: TCGTAATCGGTTTCAT
Locus tag: LAF_0780
Name: lacZ
Funciton: Beta-galactosidase (EC 3.2.1.23)
Locus tag: LAF_0779
Name: lacS
Funciton: Lactose and galactose permease, GPH translocator family
lacZ
Beta-galactosidase (EC 3.2.1.23)
lacS
Lactose and galactose permease, GPH translocator family

Position: -179
Score: 4.9
Sequence: TTGACAGCGCTTACAA
Locus tag: LAF_0383
Name: lp_0827
Funciton: Conserved hypothetical protein
lp_0827
Conserved hypothetical protein

Position: -140
Score: 4.7
Sequence: TAGTAAGCGTTTACAG
Locus tag: LAF_0391
Name: manL
Funciton: Mannose-specific PTS system, IIAB component (EC 2.7.1.69)
Locus tag: LAF_0392
Name: manM
Funciton: Mannose-specific PTS system, IIC component (EC 2.7.1.69)
Locus tag: LAF_0393
Name: manN
Funciton: Mannose-specific PTS system, IID component (EC 2.7.1.69)
Locus tag: LAF_0394
Name: manO
Funciton: Predicted regulator of the mannose operon, ManO
manL
Mannose-specific PTS system, IIAB component (EC 2.7.1.69)
manM
Mannose-specific PTS system, IIC component (EC 2.7.1.69)
manN
Mannose-specific PTS system, IID component (EC 2.7.1.69)
manO
Predicted regulator of the mannose operon, ManO

Position: -111
Score: 4.6
Sequence: ATGAAAACGGTTTATT
Locus tag: LAF_1558
Name: araB
Funciton: Ribulokinase (EC 2.7.1.16)
Locus tag: LAF_1557
Name: araD
Funciton: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)
araB
Ribulokinase (EC 2.7.1.16)
araD
L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)

Position: -36
Score: 4.4
Sequence: ATGTAAGCATATTCAT
Locus tag: LAF_1176
Name: arcD
Funciton: Arginine/ornithine antiporter
arcD
Arginine/ornithine antiporter

Position: -77
Score: 4.3
Sequence: AAGTAACCGTTTTCAC
Locus tag: LAF_0740
Name: malR3
Funciton: Predicted maltose/maltodextrin utilization transcriptional regulator MalR3, LacI family
malR3
Predicted maltose/maltodextrin utilization transcriptional regulator MalR3, LacI family

Position: -99
Score: 4.1
Sequence: ATGTAAGCGCTCTATT
Locus tag: LAF_1792
Name: galK
Funciton: Galactokinase (EC 2.7.1.6)
Locus tag: LAF_1791
Name: galT
Funciton: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10)
Locus tag: LAF_1790
Name: galR
Funciton: Galactose utilization transcriptional regulator GalR, LacI family
galK
Galactokinase (EC 2.7.1.6)
galT
Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10)
galR
Galactose utilization transcriptional regulator GalR, LacI family

Position: -66
Score: 4.2
Sequence: ATGGAAACGTTATCGT
Locus tag: LAF_0411
Name: pgi
Funciton: Glucose-6-phosphate isomerase (EC 5.3.1.9)
pgi
Glucose-6-phosphate isomerase (EC 5.3.1.9)

Position: -65
Score: 4.7
Sequence: TTGAAAACGCTTGCTA
Locus tag: LAF_0298
Name: arcB
Funciton: Ornithine carbamoyltransferase (EC 2.1.3.3)
Locus tag: LAF_0299
Name: arcC
Funciton: Carbamate kinase (EC 2.7.2.2)
Locus tag: LAF_0300
Name: arcA
Funciton: Arginine deiminase (EC 3.5.3.6)
Locus tag: LAF_0301
Name: arcD
Funciton: Arginine/ornithine antiporter ArcD
arcB
Ornithine carbamoyltransferase (EC 2.1.3.3)
arcC
Carbamate kinase (EC 2.7.2.2)
arcA
Arginine deiminase (EC 3.5.3.6)
arcD
Arginine/ornithine antiporter ArcD

Position: -100
Score: 4.3
Sequence: TGGTAAGCGTTTTATA
Position: -76
Score: 4.4
Sequence: GTGAAATCGCTTACAG
Locus tag: LAF_1555
Name: araE
Funciton: Arabinose-proton symporter
Locus tag: LAF_1554
Name: araA
Funciton: L-arabinose isomerase (EC 5.3.1.4)
araE
Arabinose-proton symporter
araA
L-arabinose isomerase (EC 5.3.1.4)

Position: -217
Score: 4.3
Sequence: TGGGAAGCGGTTTCTA
Locus tag: LAF_0402
Name: xylA
Funciton: Xylose isomerase (EC 5.3.1.5)
Locus tag: LAF_0403
Name: xylB
Funciton: Xylulose kinase (EC 2.7.1.17)
xylA
Xylose isomerase (EC 5.3.1.5)
xylB
Xylulose kinase (EC 2.7.1.17)
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