Regulon of CcpA in Lactobacillus fermentum IFO 3956
| Regulator type: | Transcription factor |
| TF locus tag: | LAF_0539 |
| Regulator family: | LacI |
| Regulation mode: | |
| Biological process: | Carbon catabolism |
| Effector: | HPr, phosphocarrier protein; Fructose-1,6-bisphosphate |
| Regulog: | CcpA - Lactobacillaceae |
| Statistics of regulated genes: | |
| - Genes | 51 |
| - Operons | 30 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Lactobacillaceae
- By trascription factor - CcpA
- By TF family - LacI
- By effector - HPr, phosphocarrier protein
- By effector - Fructose-1,6-bisphosphate
- By pathway - Carbon catabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -158
Score: 4.3 Sequence: TAGCAAACGCTTGCAT
Position: -103
Score: 4.5 Sequence: TTGCAACCGCTTTCCT
Locus tag: LAF_1738
Name: rbsK Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: LAF_1737
Name: rbsD Funciton: Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1)
Locus tag: LAF_1736
Name: rbsP Funciton: Predicted ribose permease |
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rbsK
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Ribokinase (EC 2.7.1.15)
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rbsD
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Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1)
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rbsP
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Predicted ribose permease
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Position: -35
Score: 4 Sequence: ATGTAAGGGCTATCCA
Locus tag: LAF_1646
Name: coaA Funciton: Pantothenate kinase (EC 2.7.1.33) |
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coaA
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Pantothenate kinase (EC 2.7.1.33)
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Position: -96
Score: 4.6 Sequence: GTGAAAACGGTTACTT
Locus tag: LAF_0739
Name: nplT Funciton: Neopullulanase (EC 3.2.1.135)
Locus tag: LAF_0738
Name: melB2 Funciton: Sugar transport protein |
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nplT
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Neopullulanase (EC 3.2.1.135)
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melB2
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Sugar transport protein
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Position: -91
Score: 4.3 Sequence: TTGTAACCGGTTTACA
Locus tag: LAF_1689
Name: rbsK Funciton: Ribokinase (EC 2.7.1.15) |
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rbsK
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Ribokinase (EC 2.7.1.15)
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Position: -158
Score: 4.3 Sequence: TAGCAAACGCTTGCAT
Position: -103
Score: 4.5 Sequence: TTGCAACCGCTTTCCT
Locus tag: LAF_1738
Name: rbsK Funciton: Ribokinase (EC 2.7.1.15)
Locus tag: LAF_1737
Name: rbsD Funciton: Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1) |
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rbsK
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Ribokinase (EC 2.7.1.15)
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rbsD
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Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1)
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Position: -119
Score: 4.8 Sequence: ATGAAACCGGTTTAAA
Locus tag: LAF_1823
Name: argR Funciton: Arginine metabolism regulator ArgR |
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argR
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Arginine metabolism regulator ArgR
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Position: -63
Score: 4.4 Sequence: GAGTTAGCGCTTTCAT
Locus tag: LAF_1686
Name: pgi Funciton: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
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pgi
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Glucose-6-phosphate isomerase (EC 5.3.1.9)
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Position: -40
Score: 4.6 Sequence: TGGAAAACGCTTACTA
Locus tag: LAF_1662
Name: galM Funciton: Aldose 1-epimerase (EC 5.1.3.3); Galactose mutarotase and related enzymes |
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galM
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Aldose 1-epimerase (EC 5.1.3.3); Galactose mutarotase and related enzymes
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Position: -82
Score: 4.6 Sequence: TAGTAACCGCTTTTAT
Locus tag: LAF_0297
Name: ycbB Funciton: Signal transduction response regulator |
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ycbB
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Signal transduction response regulator
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Position: -125
Score: 4.5 Sequence: AAGAAACCGTTTACAG
Locus tag: LAF_0868
Name: pyk Funciton: Pyruvate kinase (EC 2.7.1.40) |
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pyk
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Pyruvate kinase (EC 2.7.1.40)
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Position: -39
Score: 4.7 Sequence: ATGGAAGCGTATTCAA
Locus tag: LAF_0741
Name: dhaT Funciton: 1,3-propanediol dehydrogenase (EC 1.1.1.202) |
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dhaT
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1,3-propanediol dehydrogenase (EC 1.1.1.202)
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Position: -31
Score: 4.6 Sequence: ATGTAAGCGCTACCAA
Locus tag: LAF_0797
Name: adhX Funciton: Zn conatining alcohol dehydrogenase |
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adhX
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Zn conatining alcohol dehydrogenase
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Position: -197
Score: 4.7 Sequence: TTGAAAACGCTTTCTC
Locus tag: LAF_0277
Name: adhE Funciton: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) |
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adhE
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Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
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Position: -62
Score: 4.3 Sequence: GAAAAAGCGGTTACAA
Locus tag: LAF_0045
Name: gabD Funciton: Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24); Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16) |
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gabD
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Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24); Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
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Position: -119
Score: 4.3 Sequence: TTTGAACCGGTTACAT
Position: -73
Score: 4.2 Sequence: ATGATAACGGTTTATA
Locus tag: LAF_1735
Name: ptsI Funciton: Phosphoenolpyruvate-protein kinase, PTS system component (EC 2.7.3.9) |
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ptsI
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Phosphoenolpyruvate-protein kinase, PTS system component (EC 2.7.3.9)
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Position: -244
Score: 4.2 Sequence: ATGTAACGGCTTTCTT
Position: -169
Score: 4.5 Sequence: ATGTAAGCGGTAACTT
Locus tag: LAF_1140
Name: pdhA Funciton: Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E1 component alpha-subunit
Locus tag: LAF_1139
Name: pdhB Funciton: Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E1 component beta-subunit
Locus tag: LAF_1138
Name: pdhC Funciton: Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E2 component
Locus tag: LAF_1137
Name: pdhD Funciton: Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E3 component
Locus tag: LAF_1136
Name: lplA1 Funciton: Lipoate-protein ligase A |
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pdhA
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Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E1 component alpha-subunit
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pdhB
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Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E1 component beta-subunit
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pdhC
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Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E2 component
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pdhD
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Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E3 component
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lplA1
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Lipoate-protein ligase A
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Position: -111
Score: 4.6 Sequence: TTGAAAACGATTTCGT
Position: -65
Score: 5.4 Sequence: TTGAAAACGTTTTCAT
Locus tag: LAF_0998
Name: mmgB Funciton: 3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35) |
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mmgB
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3-hydroxybutyryl-CoA dehydrogenase (EC 1.1.1.157); 3-hydroxyacyl-CoA dehydrogenase (EC 1.1.1.35)
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Position: -126
Score: 4.4 Sequence: TTGGCAGCGATTTCAA
Position: -57
Score: 4.5 Sequence: AGAAAAGCGCTTACAA
Locus tag: LAF_1578
Name: scrA Funciton: Sucrose-specific PTS system, IIABC component (EC 2.7.1.69) |
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scrA
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Sucrose-specific PTS system, IIABC component (EC 2.7.1.69)
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Position: -48
Score: 5 Sequence: TTGAAACCGTTATCAT
Locus tag: LAF_0247
Name: lacL Funciton: Beta-galactosidase large subunit (EC 3.2.1.23)
Locus tag: LAF_0248
Name: lacM Funciton: Beta-galactosidase small subunit (EC 3.2.1.23) |
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lacL
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Beta-galactosidase large subunit (EC 3.2.1.23)
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lacM
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Beta-galactosidase small subunit (EC 3.2.1.23)
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Position: -92
Score: 4.2 Sequence: TCGTAATCGGTTTCAT
Locus tag: LAF_0780
Name: lacZ Funciton: Beta-galactosidase (EC 3.2.1.23)
Locus tag: LAF_0779
Name: lacS Funciton: Lactose and galactose permease, GPH translocator family |
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lacZ
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Beta-galactosidase (EC 3.2.1.23)
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lacS
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Lactose and galactose permease, GPH translocator family
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Position: -179
Score: 4.9 Sequence: TTGACAGCGCTTACAA
Locus tag: LAF_0383
Name: lp_0827 Funciton: Conserved hypothetical protein |
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lp_0827
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Conserved hypothetical protein
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Position: -140
Score: 4.7 Sequence: TAGTAAGCGTTTACAG
Locus tag: LAF_0391
Name: manL Funciton: Mannose-specific PTS system, IIAB component (EC 2.7.1.69)
Locus tag: LAF_0392
Name: manM Funciton: Mannose-specific PTS system, IIC component (EC 2.7.1.69)
Locus tag: LAF_0393
Name: manN Funciton: Mannose-specific PTS system, IID component (EC 2.7.1.69)
Locus tag: LAF_0394
Name: manO Funciton: Predicted regulator of the mannose operon, ManO |
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manL
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Mannose-specific PTS system, IIAB component (EC 2.7.1.69)
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manM
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Mannose-specific PTS system, IIC component (EC 2.7.1.69)
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manN
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Mannose-specific PTS system, IID component (EC 2.7.1.69)
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manO
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Predicted regulator of the mannose operon, ManO
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Position: -111
Score: 4.6 Sequence: ATGAAAACGGTTTATT
Locus tag: LAF_1558
Name: araB Funciton: Ribulokinase (EC 2.7.1.16)
Locus tag: LAF_1557
Name: araD Funciton: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4) |
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araB
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Ribulokinase (EC 2.7.1.16)
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araD
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L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)
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Position: -36
Score: 4.4 Sequence: ATGTAAGCATATTCAT
Locus tag: LAF_1176
Name: arcD Funciton: Arginine/ornithine antiporter |
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arcD
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Arginine/ornithine antiporter
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Position: -77
Score: 4.3 Sequence: AAGTAACCGTTTTCAC
Locus tag: LAF_0740
Name: malR3 Funciton: Predicted maltose/maltodextrin utilization transcriptional regulator MalR3, LacI family |
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malR3
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Predicted maltose/maltodextrin utilization transcriptional regulator MalR3, LacI family
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Position: -99
Score: 4.1 Sequence: ATGTAAGCGCTCTATT
Locus tag: LAF_1792
Name: galK Funciton: Galactokinase (EC 2.7.1.6)
Locus tag: LAF_1791
Name: galT Funciton: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10)
Locus tag: LAF_1790
Name: galR Funciton: Galactose utilization transcriptional regulator GalR, LacI family |
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galK
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Galactokinase (EC 2.7.1.6)
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galT
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Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10)
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galR
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Galactose utilization transcriptional regulator GalR, LacI family
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Position: -66
Score: 4.2 Sequence: ATGGAAACGTTATCGT
Locus tag: LAF_0411
Name: pgi Funciton: Glucose-6-phosphate isomerase (EC 5.3.1.9) |
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pgi
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Glucose-6-phosphate isomerase (EC 5.3.1.9)
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Position: -65
Score: 4.7 Sequence: TTGAAAACGCTTGCTA
Locus tag: LAF_0298
Name: arcB Funciton: Ornithine carbamoyltransferase (EC 2.1.3.3)
Locus tag: LAF_0299
Name: arcC Funciton: Carbamate kinase (EC 2.7.2.2)
Locus tag: LAF_0300
Name: arcA Funciton: Arginine deiminase (EC 3.5.3.6)
Locus tag: LAF_0301
Name: arcD Funciton: Arginine/ornithine antiporter ArcD |
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arcB
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Ornithine carbamoyltransferase (EC 2.1.3.3)
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arcC
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Carbamate kinase (EC 2.7.2.2)
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arcA
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Arginine deiminase (EC 3.5.3.6)
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arcD
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Arginine/ornithine antiporter ArcD
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Position: -100
Score: 4.3 Sequence: TGGTAAGCGTTTTATA
Position: -76
Score: 4.4 Sequence: GTGAAATCGCTTACAG
Locus tag: LAF_1555
Name: araE Funciton: Arabinose-proton symporter
Locus tag: LAF_1554
Name: araA Funciton: L-arabinose isomerase (EC 5.3.1.4) |
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araE
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Arabinose-proton symporter
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araA
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L-arabinose isomerase (EC 5.3.1.4)
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Position: -217
Score: 4.3 Sequence: TGGGAAGCGGTTTCTA
Locus tag: LAF_0402
Name: xylA Funciton: Xylose isomerase (EC 5.3.1.5)
Locus tag: LAF_0403
Name: xylB Funciton: Xylulose kinase (EC 2.7.1.17) |
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xylA
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Xylose isomerase (EC 5.3.1.5)
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xylB
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Xylulose kinase (EC 2.7.1.17)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |