Regulon of CcpA in Lactobacillus brevis ATCC 367
| Regulator type: | Transcription factor |
| TF locus tag: | LVIS_1203 |
| Regulator family: | LacI |
| Regulation mode: | |
| Biological process: | Carbon catabolism |
| Effector: | HPr, phosphocarrier protein; Fructose-1,6-bisphosphate |
| Regulog: | CcpA - Lactobacillaceae |
| Statistics of regulated genes: | |
| - Genes | 58 |
| - Operons | 32 |
| Visualization: | |
|
Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Lactobacillaceae
- By trascription factor - CcpA
- By TF family - LacI
- By effector - HPr, phosphocarrier protein
- By effector - Fructose-1,6-bisphosphate
- By pathway - Carbon catabolism
| Locus Tag | Name | Function | |
|---|---|---|---|
|
Position: -79
Score: 4.4 Sequence: TTGAAAGGGCTTTCGA
Locus tag: LVIS_1743
Name: araE Funciton: Arabinose-proton symporter
Locus tag: LVIS_1742
Name: araB Funciton: Ribulokinase (EC 2.7.1.16)
Locus tag: LVIS_1741
Name: araD Funciton: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)
Locus tag: LVIS_1740
Name: araA Funciton: L-arabinose isomerase (EC 5.3.1.4) |
|||
|
araE
|
Arabinose-proton symporter
|
||
|
araB
|
Ribulokinase (EC 2.7.1.16)
|
||
|
araD
|
L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)
|
||
|
araA
|
L-arabinose isomerase (EC 5.3.1.4)
|
||
|
Position: -172
Score: 4.8 Sequence: AAGTAACCGTTTTCAA
Locus tag: LVIS_2178
Name: malR3 Funciton: Predicted maltose/maltodextrin utilization transcriptional regulator MalR3, LacI family |
|||
|
malR3
|
Predicted maltose/maltodextrin utilization transcriptional regulator MalR3, LacI family
|
||
|
Position: -46
Score: 4.3 Sequence: TTGGAACCGGTTTCGT
Locus tag: LVIS_0238
Name: glpK Funciton: Glycerol kinase (EC 2.7.1.30) |
|||
|
glpK
|
Glycerol kinase (EC 2.7.1.30)
|
||
|
Position: -90
Score: 4.2 Sequence: ATGTAAGCGCTTACGC
Locus tag: LVIS_0254
Name: adhA Funciton: Alcohol dehydrogenase, Zn-dependent (EC 1.1.1.1) |
|||
|
adhA
|
Alcohol dehydrogenase, Zn-dependent (EC 1.1.1.1)
|
||
|
Position: -38
Score: 4.9 Sequence: TTGAAAACGGTTACTT
Locus tag: LVIS_2179
Name: malT2 Funciton: Predicted maltose/maltodextrin permease
Locus tag: LVIS_2180
Name: nplT Funciton: Neopullulanase (EC 3.2.1.135) |
|||
|
malT2
|
Predicted maltose/maltodextrin permease
|
||
|
nplT
|
Neopullulanase (EC 3.2.1.135)
|
||
|
Position: -235
Score: 4.4 Sequence: GTGTAAGCGTTTCCTT
Locus tag: LVIS_0621
Name: lrgA Funciton: Antiholin-like protein LrgA
Locus tag: LVIS_0620
Name: lrgB Funciton: LrgA-associated membrane protein LrgB |
|||
|
lrgA
|
Antiholin-like protein LrgA
|
||
|
lrgB
|
LrgA-associated membrane protein LrgB
|
||
|
Position: -188
Score: 4.6 Sequence: TTGAAAGCGCTTTATG
Locus tag: LVIS_0311
Name: pnuC Funciton: NrdR-regulated deoxyribonucleotide transporter; Nicotinamide mononucleotide transporter |
|||
|
pnuC
|
NrdR-regulated deoxyribonucleotide transporter; Nicotinamide mononucleotide transporter
|
||
|
Position: -86
Score: 4.8 Sequence: TAGAAAGCGCTTGCAA
Locus tag: LVIS_1656
Name: pmi Funciton: Mannose-6-phosphate isomerase (EC 5.3.1.8) |
|||
|
pmi
|
Mannose-6-phosphate isomerase (EC 5.3.1.8)
|
||
|
Position: -65
Score: 4.7 Sequence: TAGAAAGCGTTTTCGT
Locus tag: LVIS_2029
Name: ycbA Funciton: Signal transduction histidine kinase
Locus tag: LVIS_2030
Name: ycbB Funciton: Signal transduction response regulator |
|||
|
ycbA
|
Signal transduction histidine kinase
|
||
|
ycbB
|
Signal transduction response regulator
|
||
|
Position: -181
Score: 4.1 Sequence: CGGAAAACGCTTACTT
Locus tag: LVIS_0765
Name: pyk Funciton: Pyruvate kinase (EC 2.7.1.40) |
|||
|
pyk
|
Pyruvate kinase (EC 2.7.1.40)
|
||
|
Position: -191
Score: 4.6 Sequence: TTGAAAGCGGTAAAAA
Locus tag: LVIS_2191
Name: dhaT Funciton: 1,3-propanediol dehydrogenase (EC 1.1.1.202) |
|||
|
dhaT
|
1,3-propanediol dehydrogenase (EC 1.1.1.202)
|
||
|
Position: -107
Score: 4.7 Sequence: TCGAAAACGTTTTCAA
Position: -49
Score: 4.1 Sequence: TTGAAAACGGATGAAA
Locus tag: LVIS_1203
Name: ccpA Funciton: Carbon catabolism global transcriptional regulator CcpA, LacI family |
|||
|
ccpA
|
Carbon catabolism global transcriptional regulator CcpA, LacI family
|
||
|
Position: -173
Score: 4.4 Sequence: CTGTATGCGCTTACAT
Locus tag: LVIS_0119
Name: adhE Funciton: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10) |
|||
|
adhE
|
Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
|
||
|
Position: -150
Score: 4.9 Sequence: TTGAAAACGGTTAAAT
Locus tag: LVIS_0323
Name: gabD Funciton: Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24); Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16) |
|||
|
gabD
|
Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24); Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
|
||
|
Position: -19
Score: 4.5 Sequence: ATGAAAGGGCTTACTT
Locus tag: LVIS_1586
Name: gntP Funciton: H+/gluconate symporter related permease |
|||
|
gntP
|
H+/gluconate symporter related permease
|
||
|
Position: -71
Score: 4.2 Sequence: ATGAAAGCGGTGCCAT
Locus tag: LVIS_0357
Name: malT Funciton: Predicted maltose/maltodextrin permease
Locus tag: LVIS_0358
Name: mapA Funciton: Maltose phosphorylase (EC 2.4.1.8) / Trehalose phosphorylase (EC 2.4.1.64) |
|||
|
malT
|
Predicted maltose/maltodextrin permease
|
||
|
mapA
|
Maltose phosphorylase (EC 2.4.1.8) / Trehalose phosphorylase (EC 2.4.1.64)
|
||
|
Position: -103
Score: 4.9 Sequence: TTGAAAACGTTTTCGA
Locus tag: LVIS_1204
Name: pepQ Funciton: Xaa-Pro dipeptidase (EC 3.4.13.9) |
|||
|
pepQ
|
Xaa-Pro dipeptidase (EC 3.4.13.9)
|
||
|
Position: -199
Score: 4.3 Sequence: TTGTAAGCCCTTTAAT
Locus tag: LVIS_1589
Name: rbsD Funciton: Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1)
Locus tag: LVIS_1588
Name: rbsP Funciton: Predicted ribose permease |
|||
|
rbsD
|
Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1)
|
||
|
rbsP
|
Predicted ribose permease
|
||
|
Position: -97
Score: 4.2 Sequence: ATGAAAGCGTTTGACA
Position: -75
Score: 4.3 Sequence: AGGAAAACGTTTACCA
Locus tag: LVIS_0438
Name: LVIS_0438 Funciton: Hypothetical protein
Locus tag: LVIS_0439
Name: LVIS_0439 Funciton: Sugar phosphate isomerase/epimerase
Locus tag: LVIS_0440
Name: LVIS_0440 Funciton: H+/gluconate symporter related permease
Locus tag: LVIS_0441
Name: LVIS_0441 Funciton: 2-dehydro-3-deoxygluconokinase |
|||
|
LVIS_0438
|
Hypothetical protein
|
||
|
LVIS_0439
|
Sugar phosphate isomerase/epimerase
|
||
|
LVIS_0440
|
H+/gluconate symporter related permease
|
||
|
LVIS_0441
|
2-dehydro-3-deoxygluconokinase
|
||
|
Position: -117
Score: 4.4 Sequence: ATGAAAGGGCTTGCAA
Locus tag: LVIS_1410
Name: pdhA Funciton: Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E1 component alpha-subunit
Locus tag: LVIS_1409
Name: pdhB Funciton: Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E1 component beta-subunit
Locus tag: LVIS_1408
Name: pdhC Funciton: Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E2 component
Locus tag: LVIS_1407
Name: pdhD Funciton: Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E3 component |
|||
|
pdhA
|
Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E1 component alpha-subunit
|
||
|
pdhB
|
Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E1 component beta-subunit
|
||
|
pdhC
|
Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E2 component
|
||
|
pdhD
|
Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E3 component
|
||
|
Position: -101
Score: 4.7 Sequence: TTGTAATCGATTACAA
Locus tag: LVIS_0180
Name: lplA1 Funciton: Lipoate-protein ligase A |
|||
|
lplA1
|
Lipoate-protein ligase A
|
||
|
Position: -32
Score: 4.5 Sequence: GTGTAAGCGTTTTATA
Locus tag: LVIS_2259
Name: lacL Funciton: Beta-galactosidase large subunit (EC 3.2.1.23)
Locus tag: LVIS_2258
Name: lacM Funciton: Beta-galactosidase small subunit (EC 3.2.1.23) |
|||
|
lacL
|
Beta-galactosidase large subunit (EC 3.2.1.23)
|
||
|
lacM
|
Beta-galactosidase small subunit (EC 3.2.1.23)
|
||
|
Position: -166
Score: 4.9 Sequence: TTGACAGCGCTTACAA
Locus tag: LVIS_0695
Name: lp_0827 Funciton: Conserved hypothetical protein |
|||
|
lp_0827
|
Conserved hypothetical protein
|
||
|
Position: -113
Score: 4.7 Sequence: ATGATACCGCTTACAA
Locus tag: LVIS_1619
Name: glpF2 Funciton: Glycerol uptake facilitator protein |
|||
|
glpF2
|
Glycerol uptake facilitator protein
|
||
|
Position: -152
Score: 4.3 Sequence: TTGAAAGCGTGAACAA
Locus tag: LVIS_0313
Name: spxB Funciton: Pyruvate oxidase (EC 1.2.3.3) |
|||
|
spxB
|
Pyruvate oxidase (EC 1.2.3.3)
|
||
|
Position: 61
Score: 4.2 Sequence: TTGAAGGCGCTTACGA
Locus tag: LVIS_0465
Name: bglA Funciton: 6-phospho-beta-glucosidase (EC 3.2.1.86) |
|||
|
bglA
|
6-phospho-beta-glucosidase (EC 3.2.1.86)
|
||
|
Position: -202
Score: 4.7 Sequence: ATGTCAACGCTTTCAT
Position: -115
Score: 4.2 Sequence: GTGTAAGCGGTTGCAG
Locus tag: LVIS_0463
Name: xynT Funciton: Na+/xyloside symporter
Locus tag: LVIS_0464
Name: xylR Funciton: Xylose repressor XylR, ROK family |
|||
|
xynT
|
Na+/xyloside symporter
|
||
|
xylR
|
Xylose repressor XylR, ROK family
|
||
|
Position: -122
Score: 4 Sequence: GTGTTACCGTTTGCAA
Locus tag: LVIS_2109
Name: xylR Funciton: Xylose repressor XylR, ROK family |
|||
|
xylR
|
Xylose repressor XylR, ROK family
|
||
|
Position: -98
Score: 4.7 Sequence: ATGAAAACGTTTTATA
Locus tag: LVIS_1904
Name: galK Funciton: Galactokinase (EC 2.7.1.6)
Locus tag: LVIS_1903
Name: galE Funciton: UDP-glucose 4-epimerase (EC 5.1.3.2)
Locus tag: LVIS_1902
Name: galT Funciton: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10)
Locus tag: LVIS_1901
Name: galR Funciton: Galactose utilization transcriptional regulator GalR, LacI family |
|||
|
galK
|
Galactokinase (EC 2.7.1.6)
|
||
|
galE
|
UDP-glucose 4-epimerase (EC 5.1.3.2)
|
||
|
galT
|
Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10)
|
||
|
galR
|
Galactose utilization transcriptional regulator GalR, LacI family
|
||
|
Position: -96
Score: 4.3 Sequence: TTGGAAACGCTTCCCA
Locus tag: LVIS_2210
Name: ptcA Funciton: Putrescine carbamoyltransferase (EC 2.1.3.6)
Locus tag: LVIS_2209
Name: aguD Funciton: Agmatine:putrescine antiporter
Locus tag: LVIS_2208
Name: aguA1 Funciton: Agmatine iminohydrolase (EC 3.5.3.12)
Locus tag: LVIS_2207
Name: arcC2 Funciton: Carbamate kinase (EC 2.7.2.2)
Locus tag: LVIS_2206
Name: aguA2 Funciton: Agmatine iminohydrolase (EC 3.5.3.12)
Locus tag: LVIS_2205
Name: LVIS_2205 Funciton: Transcriptional regulator, RpiR family |
|||
|
ptcA
|
Putrescine carbamoyltransferase (EC 2.1.3.6)
|
||
|
aguD
|
Agmatine:putrescine antiporter
|
||
|
aguA1
|
Agmatine iminohydrolase (EC 3.5.3.12)
|
||
|
arcC2
|
Carbamate kinase (EC 2.7.2.2)
|
||
|
aguA2
|
Agmatine iminohydrolase (EC 3.5.3.12)
|
||
|
LVIS_2205
|
Transcriptional regulator, RpiR family
|
||
|
Position: -91
Score: 3.9 Sequence: GCGAAAACGCTTGCAT
Locus tag: LVIS_0183
Name: xylA Funciton: Xylose isomerase (EC 5.3.1.5)
Locus tag: LVIS_0184
Name: xylB Funciton: Xylulose kinase (EC 2.7.1.17) |
|||
|
xylA
|
Xylose isomerase (EC 5.3.1.5)
|
||
|
xylB
|
Xylulose kinase (EC 2.7.1.17)
|
||
|
Position: -40
Score: 4.5 Sequence: ATCAAACCGCTTTCAT
Locus tag: LVIS_2031
Name: arcD Funciton: Arginine/ornithine antiporter
Locus tag: LVIS_2032
Name: arcT Funciton: Xaa-His dipeptidase (EC 3.4.13.3) |
|||
|
arcD
|
Arginine/ornithine antiporter
|
||
|
arcT
|
Xaa-His dipeptidase (EC 3.4.13.3)
|
||
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |