Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of CcpA in Lactobacillus brevis ATCC 367

Properties
Regulator type: Transcription factor
TF locus tag: LVIS_1203
Regulator family: LacI
Regulation mode:
Biological process: Carbon catabolism
Effector: HPr, phosphocarrier protein; Fructose-1,6-bisphosphate
Regulog: CcpA - Lactobacillaceae
Statistics of regulated genes:
- Genes 58
- Operons 32
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 561 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -79
Score: 4.4
Sequence: TTGAAAGGGCTTTCGA
Locus tag: LVIS_1743
Name: araE
Funciton: Arabinose-proton symporter
Locus tag: LVIS_1742
Name: araB
Funciton: Ribulokinase (EC 2.7.1.16)
Locus tag: LVIS_1741
Name: araD
Funciton: L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)
Locus tag: LVIS_1740
Name: araA
Funciton: L-arabinose isomerase (EC 5.3.1.4)
araE
Arabinose-proton symporter
araB
Ribulokinase (EC 2.7.1.16)
araD
L-ribulose-5-phosphate 4-epimerase (EC 5.1.3.4)
araA
L-arabinose isomerase (EC 5.3.1.4)

Position: -172
Score: 4.8
Sequence: AAGTAACCGTTTTCAA
Locus tag: LVIS_2178
Name: malR3
Funciton: Predicted maltose/maltodextrin utilization transcriptional regulator MalR3, LacI family
malR3
Predicted maltose/maltodextrin utilization transcriptional regulator MalR3, LacI family

Position: -46
Score: 4.3
Sequence: TTGGAACCGGTTTCGT
Locus tag: LVIS_0238
Name: glpK
Funciton: Glycerol kinase (EC 2.7.1.30)
glpK
Glycerol kinase (EC 2.7.1.30)

Position: -90
Score: 4.2
Sequence: ATGTAAGCGCTTACGC
Locus tag: LVIS_0254
Name: adhA
Funciton: Alcohol dehydrogenase, Zn-dependent (EC 1.1.1.1)
adhA
Alcohol dehydrogenase, Zn-dependent (EC 1.1.1.1)

Position: -38
Score: 4.9
Sequence: TTGAAAACGGTTACTT
Locus tag: LVIS_2179
Name: malT2
Funciton: Predicted maltose/maltodextrin permease
Locus tag: LVIS_2180
Name: nplT
Funciton: Neopullulanase (EC 3.2.1.135)
malT2
Predicted maltose/maltodextrin permease
nplT
Neopullulanase (EC 3.2.1.135)

Position: -235
Score: 4.4
Sequence: GTGTAAGCGTTTCCTT
Locus tag: LVIS_0621
Name: lrgA
Funciton: Antiholin-like protein LrgA
Locus tag: LVIS_0620
Name: lrgB
Funciton: LrgA-associated membrane protein LrgB
lrgA
Antiholin-like protein LrgA
lrgB
LrgA-associated membrane protein LrgB

Position: -188
Score: 4.6
Sequence: TTGAAAGCGCTTTATG
Locus tag: LVIS_0311
Name: pnuC
Funciton: NrdR-regulated deoxyribonucleotide transporter; Nicotinamide mononucleotide transporter
pnuC
NrdR-regulated deoxyribonucleotide transporter; Nicotinamide mononucleotide transporter

Position: -86
Score: 4.8
Sequence: TAGAAAGCGCTTGCAA
Locus tag: LVIS_1656
Name: pmi
Funciton: Mannose-6-phosphate isomerase (EC 5.3.1.8)
pmi
Mannose-6-phosphate isomerase (EC 5.3.1.8)

Position: -65
Score: 4.7
Sequence: TAGAAAGCGTTTTCGT
Locus tag: LVIS_2029
Name: ycbA
Funciton: Signal transduction histidine kinase
Locus tag: LVIS_2030
Name: ycbB
Funciton: Signal transduction response regulator
ycbA
Signal transduction histidine kinase
ycbB
Signal transduction response regulator

Position: -181
Score: 4.1
Sequence: CGGAAAACGCTTACTT
Locus tag: LVIS_0765
Name: pyk
Funciton: Pyruvate kinase (EC 2.7.1.40)
pyk
Pyruvate kinase (EC 2.7.1.40)

Position: -191
Score: 4.6
Sequence: TTGAAAGCGGTAAAAA
Locus tag: LVIS_2191
Name: dhaT
Funciton: 1,3-propanediol dehydrogenase (EC 1.1.1.202)
dhaT
1,3-propanediol dehydrogenase (EC 1.1.1.202)

Position: -107
Score: 4.7
Sequence: TCGAAAACGTTTTCAA
Position: -49
Score: 4.1
Sequence: TTGAAAACGGATGAAA
Locus tag: LVIS_1203
Name: ccpA
Funciton: Carbon catabolism global transcriptional regulator CcpA, LacI family
ccpA
Carbon catabolism global transcriptional regulator CcpA, LacI family

Position: -173
Score: 4.4
Sequence: CTGTATGCGCTTACAT
Locus tag: LVIS_0119
Name: adhE
Funciton: Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)
adhE
Alcohol dehydrogenase (EC 1.1.1.1); Acetaldehyde dehydrogenase (EC 1.2.1.10)

Position: -150
Score: 4.9
Sequence: TTGAAAACGGTTAAAT
Locus tag: LVIS_0323
Name: gabD
Funciton: Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24); Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)
gabD
Succinate-semialdehyde dehydrogenase [NAD] (EC 1.2.1.24); Succinate-semialdehyde dehydrogenase [NADP+] (EC 1.2.1.16)

Position: -19
Score: 4.5
Sequence: ATGAAAGGGCTTACTT
Locus tag: LVIS_1586
Name: gntP
Funciton: H+/gluconate symporter related permease
gntP
H+/gluconate symporter related permease

Position: -71
Score: 4.2
Sequence: ATGAAAGCGGTGCCAT
Locus tag: LVIS_0357
Name: malT
Funciton: Predicted maltose/maltodextrin permease
Locus tag: LVIS_0358
Name: mapA
Funciton: Maltose phosphorylase (EC 2.4.1.8) / Trehalose phosphorylase (EC 2.4.1.64)
malT
Predicted maltose/maltodextrin permease
mapA
Maltose phosphorylase (EC 2.4.1.8) / Trehalose phosphorylase (EC 2.4.1.64)

Position: -103
Score: 4.9
Sequence: TTGAAAACGTTTTCGA
Locus tag: LVIS_1204
Name: pepQ
Funciton: Xaa-Pro dipeptidase (EC 3.4.13.9)
pepQ
Xaa-Pro dipeptidase (EC 3.4.13.9)

Position: -199
Score: 4.3
Sequence: TTGTAAGCCCTTTAAT
Locus tag: LVIS_1589
Name: rbsD
Funciton: Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1)
Locus tag: LVIS_1588
Name: rbsP
Funciton: Predicted ribose permease
rbsD
Ribose ABC transport system, high affinity permease RbsD (TC 3.A.1.2.1)
rbsP
Predicted ribose permease

Position: -97
Score: 4.2
Sequence: ATGAAAGCGTTTGACA
Position: -75
Score: 4.3
Sequence: AGGAAAACGTTTACCA
Locus tag: LVIS_0438
Name: LVIS_0438
Funciton: Hypothetical protein
Locus tag: LVIS_0439
Name: LVIS_0439
Funciton: Sugar phosphate isomerase/epimerase
Locus tag: LVIS_0440
Name: LVIS_0440
Funciton: H+/gluconate symporter related permease
Locus tag: LVIS_0441
Name: LVIS_0441
Funciton: 2-dehydro-3-deoxygluconokinase
LVIS_0438
Hypothetical protein
LVIS_0439
Sugar phosphate isomerase/epimerase
LVIS_0440
H+/gluconate symporter related permease
LVIS_0441
2-dehydro-3-deoxygluconokinase

Position: -117
Score: 4.4
Sequence: ATGAAAGGGCTTGCAA
Locus tag: LVIS_1410
Name: pdhA
Funciton: Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E1 component alpha-subunit
Locus tag: LVIS_1409
Name: pdhB
Funciton: Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E1 component beta-subunit
Locus tag: LVIS_1408
Name: pdhC
Funciton: Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E2 component
Locus tag: LVIS_1407
Name: pdhD
Funciton: Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E3 component
pdhA
Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E1 component alpha-subunit
pdhB
Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E1 component beta-subunit
pdhC
Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E2 component
pdhD
Dihydrolipoamide dehydrogenase complex (EC 1.8.1.4), E3 component

Position: -101
Score: 4.7
Sequence: TTGTAATCGATTACAA
Locus tag: LVIS_0180
Name: lplA1
Funciton: Lipoate-protein ligase A
lplA1
Lipoate-protein ligase A

Position: -32
Score: 4.5
Sequence: GTGTAAGCGTTTTATA
Locus tag: LVIS_2259
Name: lacL
Funciton: Beta-galactosidase large subunit (EC 3.2.1.23)
Locus tag: LVIS_2258
Name: lacM
Funciton: Beta-galactosidase small subunit (EC 3.2.1.23)
lacL
Beta-galactosidase large subunit (EC 3.2.1.23)
lacM
Beta-galactosidase small subunit (EC 3.2.1.23)

Position: -166
Score: 4.9
Sequence: TTGACAGCGCTTACAA
Locus tag: LVIS_0695
Name: lp_0827
Funciton: Conserved hypothetical protein
lp_0827
Conserved hypothetical protein

Position: -113
Score: 4.7
Sequence: ATGATACCGCTTACAA
Locus tag: LVIS_1619
Name: glpF2
Funciton: Glycerol uptake facilitator protein
glpF2
Glycerol uptake facilitator protein

Position: -152
Score: 4.3
Sequence: TTGAAAGCGTGAACAA
Locus tag: LVIS_0313
Name: spxB
Funciton: Pyruvate oxidase (EC 1.2.3.3)
spxB
Pyruvate oxidase (EC 1.2.3.3)

Position: 61
Score: 4.2
Sequence: TTGAAGGCGCTTACGA
Locus tag: LVIS_0465
Name: bglA
Funciton: 6-phospho-beta-glucosidase (EC 3.2.1.86)
bglA
6-phospho-beta-glucosidase (EC 3.2.1.86)

Position: -202
Score: 4.7
Sequence: ATGTCAACGCTTTCAT
Position: -115
Score: 4.2
Sequence: GTGTAAGCGGTTGCAG
Locus tag: LVIS_0463
Name: xynT
Funciton: Na+/xyloside symporter
Locus tag: LVIS_0464
Name: xylR
Funciton: Xylose repressor XylR, ROK family
xynT
Na+/xyloside symporter
xylR
Xylose repressor XylR, ROK family

Position: -122
Score: 4
Sequence: GTGTTACCGTTTGCAA
Locus tag: LVIS_2109
Name: xylR
Funciton: Xylose repressor XylR, ROK family
xylR
Xylose repressor XylR, ROK family

Position: -98
Score: 4.7
Sequence: ATGAAAACGTTTTATA
Locus tag: LVIS_1904
Name: galK
Funciton: Galactokinase (EC 2.7.1.6)
Locus tag: LVIS_1903
Name: galE
Funciton: UDP-glucose 4-epimerase (EC 5.1.3.2)
Locus tag: LVIS_1902
Name: galT
Funciton: Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10)
Locus tag: LVIS_1901
Name: galR
Funciton: Galactose utilization transcriptional regulator GalR, LacI family
galK
Galactokinase (EC 2.7.1.6)
galE
UDP-glucose 4-epimerase (EC 5.1.3.2)
galT
Galactose-1-phosphate uridylyltransferase (EC 2.7.7.10)
galR
Galactose utilization transcriptional regulator GalR, LacI family

Position: -96
Score: 4.3
Sequence: TTGGAAACGCTTCCCA
Locus tag: LVIS_2210
Name: ptcA
Funciton: Putrescine carbamoyltransferase (EC 2.1.3.6)
Locus tag: LVIS_2209
Name: aguD
Funciton: Agmatine:putrescine antiporter
Locus tag: LVIS_2208
Name: aguA1
Funciton: Agmatine iminohydrolase (EC 3.5.3.12)
Locus tag: LVIS_2207
Name: arcC2
Funciton: Carbamate kinase (EC 2.7.2.2)
Locus tag: LVIS_2206
Name: aguA2
Funciton: Agmatine iminohydrolase (EC 3.5.3.12)
Locus tag: LVIS_2205
Name: LVIS_2205
Funciton: Transcriptional regulator, RpiR family
ptcA
Putrescine carbamoyltransferase (EC 2.1.3.6)
aguD
Agmatine:putrescine antiporter
aguA1
Agmatine iminohydrolase (EC 3.5.3.12)
arcC2
Carbamate kinase (EC 2.7.2.2)
aguA2
Agmatine iminohydrolase (EC 3.5.3.12)
LVIS_2205
Transcriptional regulator, RpiR family

Position: -91
Score: 3.9
Sequence: GCGAAAACGCTTGCAT
Locus tag: LVIS_0183
Name: xylA
Funciton: Xylose isomerase (EC 5.3.1.5)
Locus tag: LVIS_0184
Name: xylB
Funciton: Xylulose kinase (EC 2.7.1.17)
xylA
Xylose isomerase (EC 5.3.1.5)
xylB
Xylulose kinase (EC 2.7.1.17)

Position: -40
Score: 4.5
Sequence: ATCAAACCGCTTTCAT
Locus tag: LVIS_2031
Name: arcD
Funciton: Arginine/ornithine antiporter
Locus tag: LVIS_2032
Name: arcT
Funciton: Xaa-His dipeptidase (EC 3.4.13.3)
arcD
Arginine/ornithine antiporter
arcT
Xaa-His dipeptidase (EC 3.4.13.3)
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD