Regulon of XylR in Lactobacillus fermentum IFO 3956
| Regulator type: | Transcription factor |
| TF locus tag: | LAF_0400 |
| Regulator family: | ROK |
| Regulation mode: | repressor |
| Biological process: | Xylose utilization |
| Effector: | Xylose |
| Regulog: | XylR - Lactobacillaceae |
| Statistics of regulated genes: | |
| - Genes | 5 |
| - Operons | 3 |
| Visualization: | |
|
Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Lactobacillaceae
- By trascription factor - XylR
- By TF family - ROK
- By effector - Xylose
- By pathway - Xylose utilization
| Locus Tag | Name | Function | |
|---|---|---|---|
|
Position: -53
Score: 5.1 Sequence: GTTAGTTGTTTTAAAAAACCAAT
Locus tag: LAF_0402
Name: xylA Funciton: Xylose isomerase (EC 5.3.1.5)
Locus tag: LAF_0403
Name: xylB Funciton: Xylulose kinase (EC 2.7.1.17) |
|||
|
xylA
|
Xylose isomerase (EC 5.3.1.5)
|
||
|
xylB
|
Xylulose kinase (EC 2.7.1.17)
|
||
|
Position: -121
Score: 5.5 Sequence: GTTTGTTTACTAAATAAACTAAC
Locus tag: LAF_0405
Name: xynB2 Funciton: Beta-xylosidase (EC 3.2.1.37)
Locus tag: LAF_0406
Name: xynT3 Funciton: Xyloside transporter XynT |
|||
|
xynB2
|
Beta-xylosidase (EC 3.2.1.37)
|
||
|
xynT3
|
Xyloside transporter XynT
|
||
|
Position: -90
Score: 5.2 Sequence: GTTAGTTTTTATCAGCAACTAAC
Locus tag: LAF_0401
Name: xylT Funciton: D-xylose proton-symporter XylT |
|||
|
xylT
|
D-xylose proton-symporter XylT
|
||
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |