Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of PyrR in Lactobacillus fermentum IFO 3956

Properties
Regulator type: RNA regulatory element
Name: PyrR
RFAM: RF00515
Regulation mode:
Biological process: Pyrimidine metabolism
Effector: PyrR
Regulog: PyrR - Lactobacillaceae
Under regulation:
- Genes 11
- Operons 5
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -109
Score: 49.7
Sequence: AAGTCTTTAACGACG...
Locus tag: LAF_0911
Name: codB
Funciton: Cytosine/purine/uracil/thiamine/allantoin permease family protein
Locus tag: LAF_0912
Name: codA
Funciton: Cytosine deaminase (EC 3.5.4.1)
codB
Cytosine/purine/uracil/thiamine/allantoin permease family protein
codA
Cytosine deaminase (EC 3.5.4.1)

Position: -115
Score: 43.3
Sequence: AGTCCTTTAATGGAA...
Locus tag: LAF_0434
Name: pyrP
Funciton: Xanthine/uracil permease
pyrP
Xanthine/uracil permease

Position: -116
Score: 45.4
Sequence: TCACCATTTAAGTAA...
Locus tag: LAF_0047
Name: pyrF
Funciton: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
Locus tag: LAF_0048
Name: pyrE
Funciton: Orotate phosphoribosyltransferase (EC 2.4.2.10)
pyrF
Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
pyrE
Orotate phosphoribosyltransferase (EC 2.4.2.10)

Position: -106
Score: 30.8
Sequence: ATGCCTTTAAGTGGA...
Locus tag: LAF_0046
Name: pyrR
Funciton: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR
pyrR
Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR

Position: -269
Score: 59
Sequence: GATGTCCTTTAAGCT...
Position: -146
Score: 38.4
Sequence: ATAAACCATCAAATT...
Locus tag: LAF_1205
Name: pyrB
Funciton: Aspartate carbamoyltransferase (EC 2.1.3.2)
Locus tag: LAF_1204
Name: pyrC
Funciton: Dihydroorotase (EC 3.5.2.3)
Locus tag: LAF_1203
Name: carA
Funciton: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
Locus tag: LAF_1202
Name: carB
Funciton: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
Locus tag: LAF_1201
Name: pyrD
Funciton: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
pyrB
Aspartate carbamoyltransferase (EC 2.1.3.2)
pyrC
Dihydroorotase (EC 3.5.2.3)
carA
Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
carB
Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
pyrD
Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD