Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of TPP in Lactobacillus fermentum IFO 3956

Properties
Regulator type: RNA regulatory element
Name: TPP
RFAM: RF00059
Regulation mode:
Biological process: Thiamine biosynthesis
Effector: Thiamine pyrophosphate
Regulog: TPP - Lactobacillaceae
Under regulation:
- Genes 8
- Operons 3
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -300
Score: 74.3
Sequence: CAGAATCTGTCTGGG...
Locus tag: LAF_1533
Name: ykoE
Funciton: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: LAF_1532
Name: thiW
Funciton: Substrate-specific component ThiW of predicted thiazole ECF transporter
ykoE
Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
thiW
Substrate-specific component ThiW of predicted thiazole ECF transporter

Position: -168
Score: 57.7
Sequence: TATCTTGTCTGGGGT...
Locus tag: LAF_1705
Name: ykoE
Funciton: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: LAF_1706
Name: ykoD
Funciton: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: LAF_1707
Name: ykoC
Funciton: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
ykoE
Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
ykoD
Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
ykoC
Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine

Position: -282
Score: 62
Sequence: TAATAGTTGCTAGGG...
Locus tag: LAF_0803
Name: thiM
Funciton: Hydroxyethylthiazole kinase (EC 2.7.1.50)
Locus tag: LAF_0802
Name: thiD
Funciton: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
Locus tag: LAF_0801
Name: thiE
Funciton: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
thiM
Hydroxyethylthiazole kinase (EC 2.7.1.50)
thiD
Phosphomethylpyrimidine kinase (EC 2.7.4.7)
thiE
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD