Regulon of TPP in Lactobacillus reuteri JCM 1112
| Regulator type: | RNA regulatory element |
| Name: | TPP |
| RFAM: | RF00059 |
| Regulation mode: | |
| Biological process: | Thiamine biosynthesis |
| Effector: | Thiamine pyrophosphate |
| Regulog: | TPP - Lactobacillaceae |
| Under regulation: | |
| - Genes | 7 |
| - Operons | 3 |
Member of regulog collections
- By taxonomy - Lactobacillaceae
- By RNA motif - TPP
- By effector - Thiamine pyrophosphate
- By pathway - Thiamine biosynthesis
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -156
Score: 71.9 Sequence: GAATAAATCTGGGGT...
Locus tag: LAR_1550
Name: ykoE Funciton: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: LAR_1551
Name: ykoD Funciton: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Locus tag: LAR_1552
Name: ykoC Funciton: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine |
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ykoE
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Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
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ykoD
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Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
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ykoC
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Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
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Position: -182
Score: 59.3 Sequence: TTGCATAAACGGGGA...
Locus tag: LAR_1494
Name: cytX Funciton: Predicted hydroxymethylpyrimidine transporter CytX |
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cytX
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Predicted hydroxymethylpyrimidine transporter CytX
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Position: -162
Score: 54.3 Sequence: TATTGCATTAGGGGT...
Locus tag: LAR_0968
Name: thiM Funciton: Hydroxyethylthiazole kinase (EC 2.7.1.50)
Locus tag: LAR_0969
Name: thiD Funciton: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
Locus tag: LAR_0970
Name: thiE Funciton: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3) |
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thiM
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Hydroxyethylthiazole kinase (EC 2.7.1.50)
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thiD
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Phosphomethylpyrimidine kinase (EC 2.7.4.7)
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thiE
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Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |