Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of LexA in Roseiflexus sp. RS-1

Properties
Regulator type: Transcription factor
TF locus tag: RoseRS_0427
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Regulog: LexA - Chloroflexia
Statistics of regulated genes:
- Genes 13
- Operons 10
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 52 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -135
Score: 4.9
Sequence: TAGAACAAATGTTCGA
Locus tag: RoseRS_3028
Name: Cagg_1574
Funciton: Conserved hypothetical protein
Locus tag: RoseRS_3029
Name: Cagg_1573
Funciton: Conserved hypothetical protein
Cagg_1574
Conserved hypothetical protein
Cagg_1573
Conserved hypothetical protein

Position: -34
Score: 4.4
Sequence: TCGCATACGTGTTCGC
Locus tag: RoseRS_4548
Name: mutL
Funciton: DNA mismatch repair protein MutL
mutL
DNA mismatch repair protein MutL

Position: -34
Score: 4.2
Sequence: ACGCGCATCTGTTCGA
Locus tag: RoseRS_0905
Name: sbcC
Funciton: Exonuclease SbcC
sbcC
Exonuclease SbcC

Position: -47
Score: 4.7
Sequence: TAGAACATCGGTACGA
Locus tag: RoseRS_3706
Name: mutS
Funciton: DNA mismatch repair protein MutS
mutS
DNA mismatch repair protein MutS

Position: -103
Score: 4
Sequence: TCGCACGTCTGTTCAT
Locus tag: RoseRS_3438
Name: uvrA
Funciton: Excinuclease ABC subunit A
uvrA
Excinuclease ABC subunit A

Position: -115
Score: 4.3
Sequence: TGGAACATGCATGCTA
Locus tag: RoseRS_0828
Name: ssb
Funciton: Single-stranded DNA-binding protein
ssb
Single-stranded DNA-binding protein

Position: -24
Score: 4.7
Sequence: CCGCACACGTGTGCGG
Locus tag: RoseRS_2425
Name: ruvB
Funciton: Holliday junction DNA helicase RuvB
ruvB
Holliday junction DNA helicase RuvB

Position: -86
Score: 4.1
Sequence: ACGAACACCCGTTCAC
Locus tag: RoseRS_0046
Name: Cagg_3684
Funciton: Conserved hypothetical protein
Locus tag: RoseRS_0047
Name: gyrB
Funciton: DNA gyrase subunit B (EC 5.99.1.3)
Cagg_3684
Conserved hypothetical protein
gyrB
DNA gyrase subunit B (EC 5.99.1.3)

Position: -137
Score: 5
Sequence: TAGCCCACTTGTGCGA
Position: -120
Score: 4.3
Sequence: AAGAACCTTCGTGCTA
Locus tag: RoseRS_3118
Name: recA
Funciton: Recombinase A
Locus tag: RoseRS_3117
Name: recX
Funciton: Regulatory protein RecX
recA
Recombinase A
recX
Regulatory protein RecX

Position: -40
Score: 4.6
Sequence: CCGAACACCTGTGCAG
Locus tag: RoseRS_2821
Name: parB
Funciton: Chromosome partitioning protein ParB
parB
Chromosome partitioning protein ParB
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD