Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulon of LexA in Roseiflexus castenholzii DSM 13941

Properties
Regulator type: Transcription factor
TF locus tag: Rcas_1071
Regulator family: LexA
Regulation mode: repressor
Biological process: SOS response
Effector: DNA damage
Regulog: LexA - Chloroflexia
Statistics of regulated genes:
- Genes 12
- Operons 10
Visualization:
Allows to visualize regulon content in the context of metabolic pathways
Built upon 52 sites [see more]
Member of regulog collections
Regulated operons
Locus Tag Name Function

Position: -129
Score: 4.7
Sequence: TAGAACACATGTTCTT
Locus tag: Rcas_2146
Name: Cagg_1574
Funciton: Conserved hypothetical protein
Locus tag: Rcas_2145
Name: Cagg_1573
Funciton: Conserved hypothetical protein
Cagg_1574
Conserved hypothetical protein
Cagg_1573
Conserved hypothetical protein

Position: -33
Score: 4.3
Sequence: TCGCATACGTGTTCGT
Locus tag: Rcas_0100
Name: mutL
Funciton: DNA mismatch repair protein MutL
mutL
DNA mismatch repair protein MutL

Position: -42
Score: 4.7
Sequence: TAGAACATCGGTACGA
Locus tag: Rcas_3531
Name: mutS
Funciton: DNA mismatch repair protein MutS
mutS
DNA mismatch repair protein MutS

Position: -107
Score: 4.7
Sequence: TCGCACACCTGTTCAC
Locus tag: Rcas_4419
Name: uvrA
Funciton: Excinuclease ABC subunit A
uvrA
Excinuclease ABC subunit A

Position: -114
Score: 4.3
Sequence: TGGAACATGCATGCTA
Locus tag: Rcas_0027
Name: ssb
Funciton: Single-stranded DNA-binding protein
ssb
Single-stranded DNA-binding protein

Position: -24
Score: 4.7
Sequence: CCGCACACGTGTGCGG
Locus tag: Rcas_3053
Name: ruvB
Funciton: Holliday junction DNA helicase RuvB
ruvB
Holliday junction DNA helicase RuvB

Position: -86
Score: 4.3
Sequence: TCGAACACACGTTCAT
Locus tag: Rcas_4196
Name: Cagg_3684
Funciton: Conserved hypothetical protein
Locus tag: Rcas_4195
Name: gyrB
Funciton: DNA gyrase subunit B (EC 5.99.1.3)
Cagg_3684
Conserved hypothetical protein
gyrB
DNA gyrase subunit B (EC 5.99.1.3)

Position: -137
Score: 5
Sequence: TAGCCCACTTGTGCGA
Position: -120
Score: 4.3
Sequence: AAGAACCTTCGTGCTA
Locus tag: Rcas_2960
Name: recA
Funciton: Recombinase A
recA
Recombinase A

Position: -32
Score: 4.1
Sequence: GCGCGCATCTGTTCGA
Locus tag: Rcas_4093
Name: sbcC
Funciton: Exonuclease SbcC
sbcC
Exonuclease SbcC

Position: -83
Score: 4.6
Sequence: CCGAACATCTGTACTG
Locus tag: Rcas_2543
Name: parB
Funciton: Chromosome partitioning protein ParB
parB
Chromosome partitioning protein ParB
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD