Regulon of LexA in Roseiflexus castenholzii DSM 13941
| Regulator type: | Transcription factor |
| TF locus tag: | Rcas_1071 |
| Regulator family: | LexA |
| Regulation mode: | repressor |
| Biological process: | SOS response |
| Effector: | DNA damage |
| Regulog: | LexA - Chloroflexia |
| Statistics of regulated genes: | |
| - Genes | 12 |
| - Operons | 10 |
| Visualization: | |
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Allows to visualize regulon content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Chloroflexi
- By trascription factor - LexA
- By TF family - LexA
- By effector - DNA damage
- By pathway - SOS response
| Locus Tag | Name | Function | |
|---|---|---|---|
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Position: -129
Score: 4.7 Sequence: TAGAACACATGTTCTT
Locus tag: Rcas_2146
Name: Cagg_1574 Funciton: Conserved hypothetical protein
Locus tag: Rcas_2145
Name: Cagg_1573 Funciton: Conserved hypothetical protein |
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Cagg_1574
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Conserved hypothetical protein
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Cagg_1573
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Conserved hypothetical protein
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Position: -33
Score: 4.3 Sequence: TCGCATACGTGTTCGT
Locus tag: Rcas_0100
Name: mutL Funciton: DNA mismatch repair protein MutL |
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mutL
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DNA mismatch repair protein MutL
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Position: -42
Score: 4.7 Sequence: TAGAACATCGGTACGA
Locus tag: Rcas_3531
Name: mutS Funciton: DNA mismatch repair protein MutS |
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mutS
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DNA mismatch repair protein MutS
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Position: -107
Score: 4.7 Sequence: TCGCACACCTGTTCAC
Locus tag: Rcas_4419
Name: uvrA Funciton: Excinuclease ABC subunit A |
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uvrA
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Excinuclease ABC subunit A
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Position: -114
Score: 4.3 Sequence: TGGAACATGCATGCTA
Locus tag: Rcas_0027
Name: ssb Funciton: Single-stranded DNA-binding protein |
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ssb
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Single-stranded DNA-binding protein
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Position: -24
Score: 4.7 Sequence: CCGCACACGTGTGCGG
Locus tag: Rcas_3053
Name: ruvB Funciton: Holliday junction DNA helicase RuvB |
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ruvB
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Holliday junction DNA helicase RuvB
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Position: -86
Score: 4.3 Sequence: TCGAACACACGTTCAT
Locus tag: Rcas_4196
Name: Cagg_3684 Funciton: Conserved hypothetical protein
Locus tag: Rcas_4195
Name: gyrB Funciton: DNA gyrase subunit B (EC 5.99.1.3) |
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Cagg_3684
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Conserved hypothetical protein
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gyrB
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DNA gyrase subunit B (EC 5.99.1.3)
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Position: -137
Score: 5 Sequence: TAGCCCACTTGTGCGA
Position: -120
Score: 4.3 Sequence: AAGAACCTTCGTGCTA
Locus tag: Rcas_2960
Name: recA Funciton: Recombinase A |
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recA
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Recombinase A
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Position: -32
Score: 4.1 Sequence: GCGCGCATCTGTTCGA
Locus tag: Rcas_4093
Name: sbcC Funciton: Exonuclease SbcC |
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sbcC
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Exonuclease SbcC
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Position: -83
Score: 4.6 Sequence: CCGAACATCTGTACTG
Locus tag: Rcas_2543
Name: parB Funciton: Chromosome partitioning protein ParB |
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parB
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Chromosome partitioning protein ParB
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |