Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog SMK_box_riboswitch - Lactobacillaceae

Properties
Regulator type: RNA regulatory element
Name: SMK_box_riboswitch
RFAM: RF01767
Regulation mode:
Biological process: Methionine metabolism
Effector: S-adenosylmethionine
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Lactobacillus acidophilus NCFM 1 1
Lactobacillus brevis ATCC 367 1 1
Lactobacillus casei ATCC 334 1 1
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 1 1
Lactobacillus fermentum IFO 3956 1 1
Lactobacillus helveticus DPC 4571 1 1
Lactobacillus johnsonii NCC 533 1 1
Lactobacillus plantarum WCFS1 1 1
Lactobacillus reuteri JCM 1112 1 1
Lactobacillus rhamnosus GG 1 1
Lactobacillus sakei subsp. sakei 23K 1 1
Lactobacillus salivarius subsp. salivarius UCC118 1 1
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
Oenococcus oeni PSU-1
Pediococcus pentosaceus ATCC 25745 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
metK
*
Lactobacillus acidophilus NCFM

Site:
position = -89
score = 61.68
sequence = TTATCGGTTCAAGTC...

Gene: LBA1622: S-adenosylmethionine synthetase (EC 2.5.1.6)
*
Lactobacillus brevis ATCC 367

Site:
position = -117
score = 53.3
sequence = CTTGAGTTATGAGTC...

Gene: LVIS_1523: S-adenosylmethionine synthetase (EC 2.5.1.6)
*
Lactobacillus casei ATCC 334

Site:
position = -85
score = 65.38
sequence = AGAGTTGCAAAACAT...

Gene: LSEI_0877: S-adenosylmethionine synthetase (EC 2.5.1.6)
*
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Site:
position = -86
score = 63.1
sequence = TATTTGTTACAAGTC...

Gene: LBUL_1455: S-adenosylmethionine synthetase (EC 2.5.1.6)
*
Lactobacillus fermentum IFO 3956

Site:
position = -90
score = 41.52
sequence = GTTATGAAGCAATTC...

Gene: LAF_1358: S-adenosylmethionine synthetase (EC 2.5.1.6)
*
Lactobacillus helveticus DPC 4571

Site:
position = -87
score = 64.18
sequence = TTATCGGTTCAAGTC...

Gene: lhv_1731: S-adenosylmethionine synthetase (EC 2.5.1.6)
*
Lactobacillus johnsonii NCC 533

Site:
position = -67
score = 63.06
sequence = TCGGTTAAGGTCCCG...

Gene: LJ0677: S-adenosylmethionine synthetase (EC 2.5.1.6)
*
Lactobacillus plantarum WCFS1

Site:
position = -102
score = 58.52
sequence = ATAGTTATGAGCCGT...

Gene: lp_1301: S-adenosylmethionine synthetase (EC 2.5.1.6)
*
Lactobacillus reuteri JCM 1112

Site:
position = -111
score = 60.12
sequence = TTCTCGTTATAAAGC...

Gene: LAR_1229: S-adenosylmethionine synthetase (EC 2.5.1.6)
*
Lactobacillus rhamnosus GG

Site:
position = -84
score = 63.14
sequence = AGAGTTGCAATACAT...

Gene: LGG_00842: S-adenosylmethionine synthetase (EC 2.5.1.6)
*
Lactobacillus sakei subsp. sakei 23K

Site:
position = -82
score = 68.91
sequence = AGAGTTATAAGAAGT...

Gene: LSA0468: S-adenosylmethionine synthetase (EC 2.5.1.6)
*
Lactobacillus salivarius subsp. salivarius UCC118

Site:
position = -84
score = 67.46
sequence = ATAGTTACAATCCAT...

Gene: LSL_0441: S-adenosylmethionine synthetase (EC 2.5.1.6)
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Oenococcus oeni PSU-1
*
Pediococcus pentosaceus ATCC 25745

Site:
position = -77
score = 51.07
sequence = TAAGTTACTAGTGTT...

Gene: PEPE_0641: S-adenosylmethionine synthetase (EC 2.5.1.6)
S-adenosylmethionine synthetase (EC 2.5.1.6)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulatory Sites [ FASTA format ] DOWNLOAD