Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog THF - Lactobacillaceae

Properties
Regulator type: RNA regulatory element
Name: THF
RFAM: RF01831
Regulation mode:
Biological process: Folate metabolism
Effector: Tetrahydrofolate
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Lactobacillus acidophilus NCFM
Lactobacillus brevis ATCC 367 1 1
Lactobacillus casei ATCC 334 1 1
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
Lactobacillus fermentum IFO 3956
Lactobacillus helveticus DPC 4571
Lactobacillus johnsonii NCC 533
Lactobacillus plantarum WCFS1
Lactobacillus reuteri JCM 1112 1 1
Lactobacillus rhamnosus GG 1 1
Lactobacillus sakei subsp. sakei 23K 1 1
Lactobacillus salivarius subsp. salivarius UCC118 1 1
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 1 1
Oenococcus oeni PSU-1
Pediococcus pentosaceus ATCC 25745 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
folT
 
Lactobacillus acidophilus NCFM

Gene: LBA0387: Substrate-specific component FolT of folate ECF transporter
*
Lactobacillus brevis ATCC 367

Site:
position = -132
score = 78.28
sequence = TTACGGAGTAGGAAA...

Gene: LVIS_0823: Substrate-specific component FolT of folate ECF transporter
*
Lactobacillus casei ATCC 334

Site:
position = -132
score = 69.56
sequence = TCTAGGAGTAGGAAC...

Gene: LSEI_2252: Substrate-specific component FolT of folate ECF transporter
 2
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Gene: LBUL_1505: Substrate-specific component FolT of folate ECF transporter

Gene: LBUL_1504: Substrate-specific component FolT of folate ECF transporter
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus helveticus DPC 4571

Gene: lhv_0410: Substrate-specific component FolT of folate ECF transporter
 
Lactobacillus johnsonii NCC 533

Gene: LJ0433: Substrate-specific component FolT of folate ECF transporter
 2
Lactobacillus plantarum WCFS1

Gene: lp_3575: Substrate-specific component FolT of folate ECF transporter

Gene: lp_0164: Substrate-specific component FolT of folate ECF transporter
*
Lactobacillus reuteri JCM 1112

Site:
position = -95
score = 36.59
sequence = TTGGGGTAGGAATCT...

Gene: LAR_1766: Substrate-specific component FolT of folate ECF transporter
*
Lactobacillus rhamnosus GG

Site:
position = -133
score = 73.23
sequence = TCTAGGAGTAGGAAC...

Gene: LGG_02255: Substrate-specific component FolT of folate ECF transporter
*
Lactobacillus sakei subsp. sakei 23K

Site:
position = -138
score = 83.09
sequence = TCGGAGTAGGGATTA...

Gene: LSA0348: Substrate-specific component FolT of folate ECF transporter
*
Lactobacillus salivarius subsp. salivarius UCC118

Site:
position = -164
score = 34.55
sequence = CTAAGGGGTAGGAAT...

Gene: LSL_1584: Substrate-specific component FolT of folate ECF transporter
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Site:
position = -168
score = 56.3
sequence = TCGGGGTAGATTGAT...

Gene: LEUM_0142: Substrate-specific component FolT of folate ECF transporter
 
Oenococcus oeni PSU-1
*
Pediococcus pentosaceus ATCC 25745

Site:
position = -163
score = 87.52
sequence = ATGGAGTAGGAATCG...

Gene: PEPE_1451: Substrate-specific component FolT of folate ECF transporter
Substrate-specific component FolT of folate ECF transporter
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD