Regulog THF - Lactobacillaceae
| Regulator type: | RNA regulatory element |
| Name: | THF |
| RFAM: | RF01831 |
| Regulation mode: | |
| Biological process: | Folate metabolism |
| Effector: | Tetrahydrofolate |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Lactobacillaceae
- By RNA motif - THF
- By effector - Tetrahydrofolate
- By pathway - Folate metabolism
| Genome | Genes | Operons |
|---|---|---|
| Lactobacillus acidophilus NCFM | ||
| Lactobacillus brevis ATCC 367 | 1 | 1 |
| Lactobacillus casei ATCC 334 | 1 | 1 |
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | ||
| Lactobacillus fermentum IFO 3956 | ||
| Lactobacillus helveticus DPC 4571 | ||
| Lactobacillus johnsonii NCC 533 | ||
| Lactobacillus plantarum WCFS1 | ||
| Lactobacillus reuteri JCM 1112 | 1 | 1 |
| Lactobacillus rhamnosus GG | 1 | 1 |
| Lactobacillus sakei subsp. sakei 23K | 1 | 1 |
| Lactobacillus salivarius subsp. salivarius UCC118 | 1 | 1 |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | 1 | 1 |
| Oenococcus oeni PSU-1 | ||
| Pediococcus pentosaceus ATCC 25745 | 1 | 1 |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| folT |
Gene: LBA0387: Substrate-specific component FolT of folate ECF transporter |
*
Lactobacillus brevis ATCC 367 Site: position = -132 score = 78.28 sequence = TTACGGAGTAGGAAA... Gene: LVIS_0823: Substrate-specific component FolT of folate ECF transporter |
*
Lactobacillus casei ATCC 334 Site: position = -132 score = 69.56 sequence = TCTAGGAGTAGGAAC... Gene: LSEI_2252: Substrate-specific component FolT of folate ECF transporter |
2
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Gene: LBUL_1505: Substrate-specific component FolT of folate ECF transporter Gene: LBUL_1504: Substrate-specific component FolT of folate ECF transporter |
|
Gene: lhv_0410: Substrate-specific component FolT of folate ECF transporter |
Gene: LJ0433: Substrate-specific component FolT of folate ECF transporter |
2
Lactobacillus plantarum WCFS1 Gene: lp_3575: Substrate-specific component FolT of folate ECF transporter Gene: lp_0164: Substrate-specific component FolT of folate ECF transporter |
*
Lactobacillus reuteri JCM 1112 Site: position = -95 score = 36.59 sequence = TTGGGGTAGGAATCT... Gene: LAR_1766: Substrate-specific component FolT of folate ECF transporter |
*
Lactobacillus rhamnosus GG Site: position = -133 score = 73.23 sequence = TCTAGGAGTAGGAAC... Gene: LGG_02255: Substrate-specific component FolT of folate ECF transporter |
*
Lactobacillus sakei subsp. sakei 23K Site: position = -138 score = 83.09 sequence = TCGGAGTAGGGATTA... Gene: LSA0348: Substrate-specific component FolT of folate ECF transporter |
*
Lactobacillus salivarius subsp. salivarius UCC118 Site: position = -164 score = 34.55 sequence = CTAAGGGGTAGGAAT... Gene: LSL_1584: Substrate-specific component FolT of folate ECF transporter |
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -168 score = 56.3 sequence = TCGGGGTAGATTGAT... Gene: LEUM_0142: Substrate-specific component FolT of folate ECF transporter |
|
*
Pediococcus pentosaceus ATCC 25745 Site: position = -163 score = 87.52 sequence = ATGGAGTAGGAATCG... Gene: PEPE_1451: Substrate-specific component FolT of folate ECF transporter |
Substrate-specific component FolT of folate ECF transporter |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |