Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog NihR - Lactobacillaceae

Properties
Regulator type: Transcription factor
Regulator family: CRP
Regulation mode: activator
Biological process: Nickel homeostasis
Effector:
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 10 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Lactobacillus acidophilus NCFM
Lactobacillus brevis ATCC 367 7 2
Lactobacillus casei ATCC 334
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
Lactobacillus fermentum IFO 3956 7 2
Lactobacillus helveticus DPC 4571
Lactobacillus johnsonii NCC 533
Lactobacillus plantarum WCFS1 6 2
Lactobacillus reuteri JCM 1112
Lactobacillus rhamnosus GG
Lactobacillus sakei subsp. sakei 23K 11 2
Lactobacillus salivarius subsp. salivarius UCC118
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
Oenococcus oeni PSU-1
Pediococcus pentosaceus ATCC 25745 7 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
PF09861
 
Lactobacillus acidophilus NCFM
*
Lactobacillus brevis ATCC 367

Site:
position = -134
score = 4.67889
sequence = CTTAACATTTGGTAAT

Gene: LVIS_1849: Conserved hypothetical protein, PF09861 family
 
Lactobacillus casei ATCC 334
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
*
Lactobacillus fermentum IFO 3956

Site:
position = -127
score = 4.3771
sequence = TTTTCCTTATGTAACA

Gene: LAF_1733: Conserved hypothetical protein, PF09861 family
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus johnsonii NCC 533
*
Lactobacillus plantarum WCFS1

Site:
position = -120
score = 4.77519
sequence = GTATACATTTGTTAAC

Gene: lp_0104: Conserved hypothetical protein, PF09861 family
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus rhamnosus GG
*
Lactobacillus sakei subsp. sakei 23K

Site:
position = -148
score = 5.02565
sequence = TTGAACATTTGTTAAC

Gene: LSA0784: Conserved hypothetical protein, PF09861 family
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Oenococcus oeni PSU-1
*
Pediococcus pentosaceus ATCC 25745

Site:
position = -95
score = 4.91674
sequence = TGTAACAAATGTTATA

Gene: PEPE_1694: Conserved hypothetical protein, PF09861 family
Conserved hypothetical protein, PF09861 family
PF00731
 
Lactobacillus acidophilus NCFM
 
Lactobacillus brevis ATCC 367

Gene: LVIS_1850: Predicted enzyme, PF00731 family
 
Lactobacillus casei ATCC 334
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus fermentum IFO 3956

Gene: LAF_1732: Predicted enzyme, PF00731 family
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1

Gene: lp_0105: Predicted enzyme, PF00731 family
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus rhamnosus GG
 
Lactobacillus sakei subsp. sakei 23K

Gene: LSA0785: Predicted enzyme, PF00731 family
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Oenococcus oeni PSU-1
 
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_1693: Predicted enzyme, PF00731 family
Predicted enzyme, PF00731 family
PF01969
 
Lactobacillus acidophilus NCFM
 
Lactobacillus brevis ATCC 367

Gene: LVIS_1851: Conserved hypothetical protein, PF01969 family
 
Lactobacillus casei ATCC 334
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus fermentum IFO 3956

Gene: LAF_1731: Conserved hypothetical protein, PF01969 family
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus rhamnosus GG
 2
Lactobacillus sakei subsp. sakei 23K

Gene: LSA0786: Conserved hypothetical protein, PF01969 family

Gene: LSA0787: Conserved hypothetical protein, PF01969 family
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Oenococcus oeni PSU-1
 
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_1692: Conserved hypothetical protein, PF01969 family
Conserved hypothetical protein, PF01969 family
LSA0788
 
Lactobacillus acidophilus NCFM

Gene: LBA1595: Predicted glycerol uptake facilitator protein
 
Lactobacillus brevis ATCC 367

Gene: LVIS_1853: Predicted glycerol uptake facilitator protein
 
Lactobacillus casei ATCC 334

Gene: LSEI_0801: Predicted glycerol uptake facilitator protein
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Gene: LBUL_0058: Predicted glycerol uptake facilitator protein
 
Lactobacillus fermentum IFO 3956

Gene: LAF_1730: Predicted glycerol uptake facilitator protein
 
Lactobacillus helveticus DPC 4571

Gene: lhv_1671: Predicted glycerol uptake facilitator protein
 
Lactobacillus johnsonii NCC 533

Gene: LJ0700: Predicted glycerol uptake facilitator protein
 3
Lactobacillus plantarum WCFS1

Gene: lp_0108: Predicted glycerol uptake facilitator protein

Gene: lp_3436: Predicted glycerol uptake facilitator protein

Gene: lp_1175: Predicted glycerol uptake facilitator protein
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus rhamnosus GG

Gene: LGG_00784: Predicted glycerol uptake facilitator protein
 2
Lactobacillus sakei subsp. sakei 23K

Gene: LSA0788: Predicted glycerol uptake facilitator protein

Gene: LSA1170: Predicted glycerol uptake facilitator protein
 
Lactobacillus salivarius subsp. salivarius UCC118

Gene: LSL_0466: Predicted glycerol uptake facilitator protein
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_1392: Predicted glycerol uptake facilitator protein
 
Oenococcus oeni PSU-1

Gene: OEOE_0349: Predicted glycerol uptake facilitator protein
 2
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_1691: Predicted glycerol uptake facilitator protein

Gene: PEPE_1249: Predicted glycerol uptake facilitator protein
Predicted glycerol uptake facilitator protein
LSA0789
 
Lactobacillus acidophilus NCFM
 
Lactobacillus brevis ATCC 367
 
Lactobacillus casei ATCC 334
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus rhamnosus GG
 
Lactobacillus sakei subsp. sakei 23K

Gene: LSA0789: Hypothetical protein
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Oenococcus oeni PSU-1
 
Pediococcus pentosaceus ATCC 25745
Hypothetical protein
LSA0790
 
Lactobacillus acidophilus NCFM
 
Lactobacillus brevis ATCC 367

Gene: LVIS_1852: ATP-utilizing enzyme of the PP-loop superfamily
 
Lactobacillus casei ATCC 334
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus fermentum IFO 3956

Gene: LAF_1729: ATP-utilizing enzyme of the PP-loop superfamily
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1

Gene: lp_0109: ATP-utilizing enzyme of the PP-loop superfamily
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus rhamnosus GG
 
Lactobacillus sakei subsp. sakei 23K

Gene: LSA0790: ATP-utilizing enzyme of the PP-loop superfamily
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Oenococcus oeni PSU-1
 
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_1690: ATP-utilizing enzyme of the PP-loop superfamily
ATP-utilizing enzyme of the PP-loop superfamily
nixA
 
Lactobacillus acidophilus NCFM
 
Lactobacillus brevis ATCC 367

Gene: LVIS_1854: High-affinity nickel permease
 
Lactobacillus casei ATCC 334
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus fermentum IFO 3956

Gene: LAF_1728: High-affinity nickel permease
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus rhamnosus GG
 
Lactobacillus sakei subsp. sakei 23K
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_2023: High-affinity nickel permease
 
Oenococcus oeni PSU-1
 
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_1696: High-affinity nickel permease
High-affinity nickel permease
nihR
 
Lactobacillus acidophilus NCFM
*
Lactobacillus brevis ATCC 367

Site:
position = -87
score = 4.67889
sequence = ATTACCAAATGTTAAG

Gene: LVIS_1848: Predicted transcriptional regulator for nickel homeostasis, Crp family
 
Lactobacillus casei ATCC 334
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
*
Lactobacillus fermentum IFO 3956

Site:
position = -129
score = 4.3771
sequence = TGTTACATAAGGAAAA

Gene: LAF_1734: Predicted transcriptional regulator for nickel homeostasis, Crp family
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus johnsonii NCC 533
*
Lactobacillus plantarum WCFS1

Site:
position = -148
score = 4.77519
sequence = GTTAACAAATGTATAC

Gene: lp_0103: Predicted transcriptional regulator for nickel homeostasis, Crp family
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus rhamnosus GG
*
Lactobacillus sakei subsp. sakei 23K

Site:
position = -101
score = 5.02565
sequence = GTTAACAAATGTTCAA

Gene: LSA0783: Predicted transcriptional regulator for nickel homeostasis, Crp family
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Oenococcus oeni PSU-1
*
Pediococcus pentosaceus ATCC 25745

Site:
position = -91
score = 4.91674
sequence = TATAACATTTGTTACA

Gene: PEPE_1695: Predicted transcriptional regulator for nickel homeostasis, Crp family
Predicted transcriptional regulator for nickel homeostasis, Crp family
nikM
 
Lactobacillus acidophilus NCFM
 
Lactobacillus brevis ATCC 367
 
Lactobacillus casei ATCC 334
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1

Gene: lp_0102: Nickel ECF transporter, substrate-binding protein
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus rhamnosus GG
 
Lactobacillus sakei subsp. sakei 23K

Gene: LSA0782: Nickel ECF transporter, substrate-binding protein
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Oenococcus oeni PSU-1
 
Pediococcus pentosaceus ATCC 25745
Nickel ECF transporter, substrate-binding protein
nikQ
 
Lactobacillus acidophilus NCFM
 
Lactobacillus brevis ATCC 367
 
Lactobacillus casei ATCC 334
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1

Gene: lp_0101: Nickel ECF transporter, transmembrane component
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus rhamnosus GG
 
Lactobacillus sakei subsp. sakei 23K

Gene: LSA0781: Nickel ECF transporter, transmembrane component
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Oenococcus oeni PSU-1
 
Pediococcus pentosaceus ATCC 25745
Nickel ECF transporter, transmembrane component
nikO
 
Lactobacillus acidophilus NCFM
 
Lactobacillus brevis ATCC 367
 
Lactobacillus casei ATCC 334
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1

Gene: lp_0100: Nickel ECF transporter, ATP-binding protein
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus rhamnosus GG
 
Lactobacillus sakei subsp. sakei 23K

Gene: LSA0780: Nickel ECF transporter, ATP-binding protein
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Oenococcus oeni PSU-1
 
Pediococcus pentosaceus ATCC 25745
Nickel ECF transporter, ATP-binding protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
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