Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog RpiR - Lactobacillaceae

Properties
Regulator type: Transcription factor
Regulator family: RpiR
Regulation mode: repressor
Biological process: Sugar utilization
Effector:
Phylum: Firmicutes
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 7 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Lactobacillus acidophilus NCFM 4 2
Lactobacillus brevis ATCC 367
Lactobacillus casei ATCC 334 3 2
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
Lactobacillus fermentum IFO 3956
Lactobacillus helveticus DPC 4571 1 1
Lactobacillus johnsonii NCC 533
Lactobacillus plantarum WCFS1
Lactobacillus reuteri JCM 1112
Lactobacillus rhamnosus GG
Lactobacillus sakei subsp. sakei 23K
Lactobacillus salivarius subsp. salivarius UCC118 3 2
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
Oenococcus oeni PSU-1
Pediococcus pentosaceus ATCC 25745
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
rpiA
*2
Lactobacillus acidophilus NCFM

Site:
position = -196
score = 5.85195
sequence = TGAAATTAATTTTCA

Gene: LBA1174: Ribose 5-phosphate isomerase (EC 5.3.1.6)

Gene: LBA0588: Ribose 5-phosphate isomerase (EC 5.3.1.6)
 
Lactobacillus brevis ATCC 367

Gene: LVIS_0574: Ribose 5-phosphate isomerase (EC 5.3.1.6)
*2
Lactobacillus casei ATCC 334

Site:
position = -44
score = 5.66643
sequence = TGAAATATAATTTCA

Gene: LSEI_2315: Ribose 5-phosphate isomerase (EC 5.3.1.6)

Gene: LSEI_2675: Ribose 5-phosphate isomerase (EC 5.3.1.6)
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Gene: LBUL_0472: Ribose 5-phosphate isomerase (EC 5.3.1.6)
 2
Lactobacillus fermentum IFO 3956

Gene: LAF_0254: Ribose 5-phosphate isomerase (EC 5.3.1.6)

Gene: LAF_1725: Ribose 5-phosphate isomerase (EC 5.3.1.6)
 
Lactobacillus helveticus DPC 4571

Gene: lhv_0612: Ribose 5-phosphate isomerase (EC 5.3.1.6)
 
Lactobacillus johnsonii NCC 533

Gene: LJ0798: Ribose 5-phosphate isomerase (EC 5.3.1.6)
 2
Lactobacillus plantarum WCFS1

Gene: lp_0354: Ribose 5-phosphate isomerase (EC 5.3.1.6)

Gene: lp_0602: Ribose 5-phosphate isomerase (EC 5.3.1.6)
 
Lactobacillus reuteri JCM 1112

Gene: LAR_0286: Ribose 5-phosphate isomerase (EC 5.3.1.6)
 
Lactobacillus rhamnosus GG

Gene: LGG_02699: Ribose 5-phosphate isomerase (EC 5.3.1.6)
 
Lactobacillus sakei subsp. sakei 23K

Gene: LSA1685: Ribose 5-phosphate isomerase (EC 5.3.1.6)
*2
Lactobacillus salivarius subsp. salivarius UCC118

Site:
position = -42
score = 5.56377
sequence = TGAAAATTAATTTCT

Gene: LSL_1439: Ribose 5-phosphate isomerase (EC 5.3.1.6)

Gene: LSL_1806: Ribose 5-phosphate isomerase (EC 5.3.1.6)
 2
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_0793: Ribose 5-phosphate isomerase (EC 5.3.1.6)

Gene: LEUM_0154: Ribose 5-phosphate isomerase (EC 5.3.1.6)
 2
Oenococcus oeni PSU-1

Gene: OEOE_0159: Ribose 5-phosphate isomerase (EC 5.3.1.6)

Gene: OEOE_1611: Ribose 5-phosphate isomerase (EC 5.3.1.6)
 
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_1506: Ribose 5-phosphate isomerase (EC 5.3.1.6)
Ribose 5-phosphate isomerase (EC 5.3.1.6)
COG0673
 2
Lactobacillus acidophilus NCFM

Gene: LBA1175: oxidoreductase, Gfo/Idh/MocA family

Gene: LBA1176: oxidoreductase, Gfo/Idh/MocA family
 
Lactobacillus brevis ATCC 367
 
Lactobacillus casei ATCC 334

Gene: LSEI_2314: oxidoreductase, Gfo/Idh/MocA family
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus helveticus DPC 4571

Gene: lhv_1523: oxidoreductase, Gfo/Idh/MocA family
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1

Gene: lp_1136: oxidoreductase, Gfo/Idh/MocA family
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus rhamnosus GG
 
Lactobacillus sakei subsp. sakei 23K
 
Lactobacillus salivarius subsp. salivarius UCC118

Gene: LSL_1440: oxidoreductase, Gfo/Idh/MocA family
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Oenococcus oeni PSU-1
 
Pediococcus pentosaceus ATCC 25745
oxidoreductase, Gfo/Idh/MocA family
 
CRON 2.
rpiR
*
Lactobacillus acidophilus NCFM

Site:
position = -107
score = 5.85195
sequence = TGAAAATTAATTTCA

Gene: LBA1172: Predicted sugar utilization transcriptional regulator, RpiR family
 
Lactobacillus brevis ATCC 367
*
Lactobacillus casei ATCC 334

Site:
position = -154
score = 5.66643
sequence = TGAAATTATATTTCA

Gene: LSEI_2316: Predicted sugar utilization transcriptional regulator, RpiR family
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus fermentum IFO 3956
*
Lactobacillus helveticus DPC 4571

Site:
position = -118
score = 5.12106
sequence = TGAAAATAAGTTACA

Gene: lhv_1519: Predicted sugar utilization transcriptional regulator, RpiR family
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus rhamnosus GG
 
Lactobacillus sakei subsp. sakei 23K
*
Lactobacillus salivarius subsp. salivarius UCC118

Site:
position = -104
score = 5.56377
sequence = AGAAATTAATTTTCA

Gene: LSL_1438: Predicted sugar utilization transcriptional regulator, RpiR family
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Oenococcus oeni PSU-1
 
Pediococcus pentosaceus ATCC 25745
Predicted sugar utilization transcriptional regulator, RpiR family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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