Regulog ArgR - Lactobacillaceae
| Regulator type: | Transcription factor |
| Regulator family: | ArgR |
| Regulation mode: | repressor, activator |
| Biological process: | Arginine degradation; Arginine biosynthesis |
| Effector: | Arginine |
| Phylum: | Firmicutes |
| Visualization: | |
|
Allows to visualize regulog content in the context of metabolic pathways |
Member of regulog collections
- By taxonomy - Lactobacillaceae
- By trascription factor - ArgR
- By TF family - ArgR
- By effector - Arginine
- By pathway - Arginine degradation
- By pathway - Arginine biosynthesis
| Genome | Genes | Operons |
|---|---|---|
| Lactobacillus acidophilus NCFM | ||
| Lactobacillus brevis ATCC 367 | 2 | 1 |
| Lactobacillus casei ATCC 334 | 5 | 2 |
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | ||
| Lactobacillus fermentum IFO 3956 | 9 | 4 |
| Lactobacillus helveticus DPC 4571 | ||
| Lactobacillus johnsonii NCC 533 | ||
| Lactobacillus plantarum WCFS1 | 11 | 4 |
| Lactobacillus reuteri JCM 1112 | 6 | 3 |
| Lactobacillus rhamnosus GG | 5 | 2 |
| Lactobacillus sakei subsp. sakei 23K | 2 | 1 |
| Lactobacillus salivarius subsp. salivarius UCC118 | 4 | 2 |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | 9 | 4 |
| Oenococcus oeni PSU-1 | ||
| Pediococcus pentosaceus ATCC 25745 | 2 | 1 |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| artPQ |
Gene: LBA0134: Arginine ABC transporter, substrate-binding and permease protein |
*
Lactobacillus brevis ATCC 367 Site: position = -161 score = 4.59067 sequence = AATGTATAAATTTTTATA Site: position = -96 score = 4.88529 sequence = AGTGTATAAAAATAGATA Gene: LVIS_1200: Arginine ABC transporter, substrate-binding and permease protein |
*
Lactobacillus casei ATCC 334 Site: position = -56 score = 4.15655 sequence = ATTGCATAAAAATCAATT Gene: LSEI_1344: Arginine ABC transporter, substrate-binding and permease protein |
|
|
Gene: lhv_0140: Arginine ABC transporter, substrate-binding and permease protein |
Gene: LJ0786: Arginine ABC transporter, substrate-binding and permease protein |
*
Lactobacillus plantarum WCFS1 Site: position = -17 score = 3.7763 sequence = CTTGCATAAATAATCATA Gene: lp_2111: Arginine ABC transporter, substrate-binding and permease protein |
*
Lactobacillus reuteri JCM 1112 Site: position = -253 score = 4.69651 sequence = ATTGCATAAATAAACATT Gene: LAR_0698: Arginine ABC transporter, substrate-binding and permease protein |
*
Lactobacillus rhamnosus GG Site: position = -56 score = 4.34671 sequence = ATTGCATAAAAATTGAAT Gene: LGG_01356: Arginine ABC transporter, substrate-binding and permease protein |
*
Lactobacillus sakei subsp. sakei 23K Site: position = -55 score = 4.51711 sequence = ATTGCATAAATATTTATA Gene: LSA1057: Arginine ABC transporter, substrate-binding and permease protein |
*
Lactobacillus salivarius subsp. salivarius UCC118 Site: position = -162 score = 3.53336 sequence = GTTACATAAATATATTTT Site: position = -82 score = 4.27988 sequence = CTTGCATAAATAAACAAT Gene: LSL_1541: Arginine ABC transporter, substrate-binding and permease protein |
|
|
*
Pediococcus pentosaceus ATCC 25745 Site: position = -94 score = 5.24797 sequence = AATGTATAAAAATTCATA Gene: PEPE_1137: Arginine ABC transporter, substrate-binding and permease protein |
Arginine ABC transporter, substrate-binding and permease protein |
| artM |
Gene: LBA0135: Arginine ABC transporter, ATP-binding protein |
Gene: LVIS_1201: Arginine ABC transporter, ATP-binding protein |
Gene: LSEI_1345: Arginine ABC transporter, ATP-binding protein |
Gene: LBUL_1213: Arginine ABC transporter, ATP-binding protein |
*
Lactobacillus fermentum IFO 3956 Site: position = -63 score = 3.57287 sequence = CTTGCATAATAATTCGTT Gene: LAF_0624: Arginine ABC transporter, ATP-binding protein |
Gene: lhv_0141: Arginine ABC transporter, ATP-binding protein |
Gene: LJ0787: Arginine ABC transporter, ATP-binding protein |
Gene: lp_2110: Arginine ABC transporter, ATP-binding protein |
Gene: LAR_0697: Arginine ABC transporter, ATP-binding protein |
Gene: LGG_01357: Arginine ABC transporter, ATP-binding protein |
Gene: LSA1056: Arginine ABC transporter, ATP-binding protein |
Gene: LSL_1540: Arginine ABC transporter, ATP-binding protein |
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -59 score = 3.00949 sequence = GATGCATATAAATTATAA Gene: LEUM_0629: Arginine ABC transporter, ATP-binding protein |
Gene: OEOE_1427: Arginine ABC transporter, ATP-binding protein |
Gene: PEPE_1136: Arginine ABC transporter, ATP-binding protein |
Arginine ABC transporter, ATP-binding protein |
| CRON 2. | ||||||||||||||||
| argC |
|
|
|
|
*
Lactobacillus fermentum IFO 3956 Site: position = -220 score = 4.91293 sequence = TGTGTATAAATATTTAGT Gene: LAF_0726: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) |
|
|
*2
Lactobacillus plantarum WCFS1 Site: position = -117 score = 4.52851 sequence = AATGAATATTTTTTCAAT Gene: lp_0528: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) Gene: lp_0487: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) |
|
|
|
|
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -71 score = 3.44278 sequence = TTTGCATATTTATTGTAT Gene: LEUM_0060: N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) |
|
|
N-acetyl-gamma-glutamyl-phosphate reductase (EC 1.2.1.38) |
| argJ |
|
|
|
|
Gene: LAF_0725: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) |
|
|
Gene: lp_0529: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) |
|
|
|
|
Gene: LEUM_0059: Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) |
|
|
Glutamate N-acetyltransferase (EC 2.3.1.35) / N-acetylglutamate synthase (EC 2.3.1.1) |
| argB |
|
|
|
|
Gene: LAF_0724: Acetylglutamate kinase (EC 2.7.2.8) |
|
|
Gene: lp_0530: Acetylglutamate kinase (EC 2.7.2.8) |
|
|
|
|
Gene: LEUM_0058: Acetylglutamate kinase (EC 2.7.2.8) |
|
|
Acetylglutamate kinase (EC 2.7.2.8) |
| argD |
|
|
|
|
Gene: LAF_0723: Acetylornithine aminotransferase (EC 2.6.1.11) |
|
|
Gene: lp_0531: Acetylornithine aminotransferase (EC 2.6.1.11) |
|
|
|
|
Gene: LEUM_0057: Acetylornithine aminotransferase (EC 2.6.1.11) |
|
|
Acetylornithine aminotransferase (EC 2.6.1.11) |
| argF |
|
|
|
|
|
|
|
Gene: lp_0532: Ornithine carbamoyltransferase (EC 2.1.3.3) |
|
|
|
|
Gene: LEUM_1457: Ornithine carbamoyltransferase (EC 2.1.3.3) |
|
|
Ornithine carbamoyltransferase (EC 2.1.3.3) |
| artP2 |
|
|
*
Lactobacillus casei ATCC 334 Site: position = -46 score = 4.4385 sequence = AATGAGTATATATTCAAT Gene: LSEI_2810: Arginine ABC transporter, substrate-binding and permease protein |
|
|
|
|
|
|
*
Lactobacillus rhamnosus GG Site: position = -46 score = 4.4385 sequence = AATGAGTATATATTCAAT Gene: LGG_02816: Arginine ABC transporter, substrate-binding and permease protein |
|
|
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -62 score = 5.3321 sequence = ATTGTATAAAAATTCAAA Gene: LEUM_0655: Arginine ABC transporter, substrate-binding and permease protein |
|
|
Arginine ABC transporter, substrate-binding and permease protein |
| argG |
|
|
Gene: LSEI_2811: Argininosuccinate synthase (EC 6.3.4.5) |
|
*
Lactobacillus fermentum IFO 3956 Site: position = -136 score = 2.25886 sequence = CTTGCATTTTTATTTGAT Gene: LAF_1625: Argininosuccinate synthase (EC 6.3.4.5) |
|
|
*
Lactobacillus plantarum WCFS1 Site: position = -139 score = 4.08651 sequence = TCTGCATAAAAATTCTAT Gene: lp_0775: Argininosuccinate synthase (EC 6.3.4.5) |
*
Lactobacillus reuteri JCM 1112 Site: position = -164 score = 4.74928 sequence = ATTAAATAATTATTCTAT Gene: LAR_0702: Argininosuccinate synthase (EC 6.3.4.5) |
Gene: LGG_02817: Argininosuccinate synthase (EC 6.3.4.5) |
|
*
Lactobacillus salivarius subsp. salivarius UCC118 Site: position = -47 score = 3.53759 sequence = AATGAATAGATTATGAAT Gene: LSL_0306: Argininosuccinate synthase (EC 6.3.4.5) |
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -73 score = 3.75835 sequence = ATTGCATATTTAATCAAA Gene: LEUM_1459: Argininosuccinate synthase (EC 6.3.4.5) |
Gene: OEOE_0939: Argininosuccinate synthase (EC 6.3.4.5) |
|
Argininosuccinate synthase (EC 6.3.4.5) |
| argH |
|
|
Gene: LSEI_2812: Argininosuccinate lyase (EC 4.3.2.1) |
|
Gene: LAF_1624: Argininosuccinate lyase (EC 4.3.2.1) |
|
|
Gene: lp_0776: Argininosuccinate lyase (EC 4.3.2.1) |
Gene: LAR_0703: Argininosuccinate lyase (EC 4.3.2.1) |
Gene: LGG_02818: Argininosuccinate lyase (EC 4.3.2.1) |
|
Gene: LSL_0305: Argininosuccinate lyase (EC 4.3.2.1) |
Gene: LEUM_1458: Argininosuccinate lyase (EC 4.3.2.1) |
|
|
Argininosuccinate lyase (EC 4.3.2.1) |
| CRON 3. | ||||||||||||||||
| carA |
2
Lactobacillus acidophilus NCFM Gene: LBA1380: Carbamoyl-phosphate synthase, small chain (EC 6.3.5.5) Gene: LBA1150: Carbamoyl-phosphate synthase, small chain (EC 6.3.5.5) |
Gene: LVIS_0830: Carbamoyl-phosphate synthase, small chain (EC 6.3.5.5) |
Gene: LSEI_1453: Carbamoyl-phosphate synthase, small chain (EC 6.3.5.5) |
2
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Gene: LBUL_0931: Carbamoyl-phosphate synthase, small chain (EC 6.3.5.5) Gene: LBUL_1951: Carbamoyl-phosphate synthase, small chain (EC 6.3.5.5) |
*3
Lactobacillus fermentum IFO 3956 Gene: LAF_1203: Carbamoyl-phosphate synthase, small chain (EC 6.3.5.5) Gene: LAF_1162: Carbamoyl-phosphate synthase, small chain (EC 6.3.5.5) Site: position = -120 score = 3.29055 sequence = CGTTCATAAATAACCAAT Gene: LAF_0727: Carbamoyl-phosphate synthase, small chain (EC 6.3.5.5) |
2
Lactobacillus helveticus DPC 4571 Gene: lhv_1444: Carbamoyl-phosphate synthase, small chain (EC 6.3.5.5) Gene: lhv_1257: Carbamoyl-phosphate synthase, small chain (EC 6.3.5.5) |
2
Lactobacillus johnsonii NCC 533 Gene: LJ1185: Carbamoyl-phosphate synthase, small chain (EC 6.3.5.5) Gene: LJ1277: Carbamoyl-phosphate synthase, small chain (EC 6.3.5.5) |
*2
Lactobacillus plantarum WCFS1 Site: position = -169 score = 4.87381 sequence = ATTGAAAAAATATTCATT Gene: lp_0527: Carbamoyl-phosphate synthase, small chain (EC 6.3.5.5) Gene: lp_2701: Carbamoyl-phosphate synthase, small chain (EC 6.3.5.5) |
*2
Lactobacillus reuteri JCM 1112 Site: position = -136 score = 3.63888 sequence = CATACATATATATTCAAT Site: position = -261 score = 4.73706 sequence = TTTGCATAAAAATTCATT Gene: LAR_0081: Carbamoyl-phosphate synthase, small chain (EC 6.3.5.5) Gene: LAR_0876: Carbamoyl-phosphate synthase, small chain (EC 6.3.5.5) |
Gene: LGG_01457: Carbamoyl-phosphate synthase, small chain (EC 6.3.5.5) |
Gene: LSA0954: Carbamoyl-phosphate synthase, small chain (EC 6.3.5.5) |
Gene: LSL_0192: Carbamoyl-phosphate synthase, small chain (EC 6.3.5.5) |
2
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Gene: LEUM_1371: Carbamoyl-phosphate synthase, small chain (EC 6.3.5.5) Gene: LEUM_1208: Carbamoyl-phosphate synthase, small chain (EC 6.3.5.5) |
Gene: OEOE_0260: Carbamoyl-phosphate synthase, small chain (EC 6.3.5.5) |
Gene: PEPE_0315: Carbamoyl-phosphate synthase, small chain (EC 6.3.5.5) |
Carbamoyl-phosphate synthase, small chain (EC 6.3.5.5) |
| carB |
2
Lactobacillus acidophilus NCFM Gene: LBA1379: Carbamoyl-phosphate synthase, large chain (EC 6.3.5.5) Gene: LBA1149: Carbamoyl-phosphate synthase, large chain (EC 6.3.5.5) |
Gene: LVIS_0829: Carbamoyl-phosphate synthase, large chain (EC 6.3.5.5) |
Gene: LSEI_1452: Carbamoyl-phosphate synthase, large chain (EC 6.3.5.5) |
2
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Gene: LBUL_0932: Carbamoyl-phosphate synthase, large chain (EC 6.3.5.5) Gene: LBUL_1950: Carbamoyl-phosphate synthase, large chain (EC 6.3.5.5) |
3
Lactobacillus fermentum IFO 3956 Gene: LAF_1202: Carbamoyl-phosphate synthase, large chain (EC 6.3.5.5) Gene: LAF_1161: Carbamoyl-phosphate synthase, large chain (EC 6.3.5.5) Gene: LAF_0728: Carbamoyl-phosphate synthase, large chain (EC 6.3.5.5) |
2
Lactobacillus helveticus DPC 4571 Gene: lhv_1443: Carbamoyl-phosphate synthase, large chain (EC 6.3.5.5) Gene: lhv_1256: Carbamoyl-phosphate synthase, large chain (EC 6.3.5.5) |
2
Lactobacillus johnsonii NCC 533 Gene: LJ1184: Carbamoyl-phosphate synthase, large chain (EC 6.3.5.5) Gene: LJ1276: Carbamoyl-phosphate synthase, large chain (EC 6.3.5.5) |
2
Lactobacillus plantarum WCFS1 Gene: lp_0526: Carbamoyl-phosphate synthase, large chain (EC 6.3.5.5) Gene: lp_2700: Carbamoyl-phosphate synthase, large chain (EC 6.3.5.5) |
2
Lactobacillus reuteri JCM 1112 Gene: LAR_0080: Carbamoyl-phosphate synthase, large chain (EC 6.3.5.5) Gene: LAR_0877: Carbamoyl-phosphate synthase, large chain (EC 6.3.5.5) |
Gene: LGG_01456: Carbamoyl-phosphate synthase, large chain (EC 6.3.5.5) |
Gene: LSA0955: Carbamoyl-phosphate synthase, large chain (EC 6.3.5.5) |
Gene: LSL_0193: Carbamoyl-phosphate synthase, large chain (EC 6.3.5.5) |
2
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Gene: LEUM_1370: Carbamoyl-phosphate synthase, large chain (EC 6.3.5.5) Gene: LEUM_1207: Carbamoyl-phosphate synthase, large chain (EC 6.3.5.5) |
Gene: OEOE_0261: Carbamoyl-phosphate synthase, large chain (EC 6.3.5.5) |
Gene: PEPE_0316: Carbamoyl-phosphate synthase, large chain (EC 6.3.5.5) |
Carbamoyl-phosphate synthase, large chain (EC 6.3.5.5) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |