Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog T-box(Ile) - Deinococcus-Thermus

Properties
Regulator type: RNA regulatory element
Name: T-box
RFAM: RF00230
Regulation mode:
Biological process: Amino acid metabolism
Effector: Ile-tRNA
Phylum: Deinococcus-Thermus
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Deinococcus radiodurans R1 1 1
Deinococcus geothermalis DSM 11300 1 1
Deinococcus deserti VCD115 1 1
Thermus thermophilus HB27 1 1
Thermus aquaticus Y51MC23 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
ileS
*
Deinococcus radiodurans R1

Site:
position = -211
score = 27.25
sequence = GAATGAGACCGCCAA...

Gene: DR1335: Isoleucyl-tRNA synthetase (EC 6.1.1.5)
*
Deinococcus geothermalis DSM 11300

Site:
position = -277
score = 14.43
sequence = CGAGAAGAGTACGCG...

Gene: Dgeo_1101: Isoleucyl-tRNA synthetase (EC 6.1.1.5)
*
Deinococcus deserti VCD115

Site:
position = -213
score = 19.41
sequence = AGTTGGGTGGTACCA...

Gene: Deide_11660: Isoleucyl-tRNA synthetase (EC 6.1.1.5)
*
Thermus thermophilus HB27

Site:
position = -272
score = 47.21
sequence = TAAAGGCGAGGATGG...

Gene: TTC0702: Isoleucyl-tRNA synthetase (EC 6.1.1.5)
*
Thermus aquaticus Y51MC23

Site:
position = -265
score = 58.84
sequence = TAAAGGCGAGGATGG...

Gene: TaqDRAFT_4339: Isoleucyl-tRNA synthetase (EC 6.1.1.5)
Isoleucyl-tRNA synthetase (EC 6.1.1.5)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD