Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog T-box(Val) - Deinococcus-Thermus

Properties
Regulator type: RNA regulatory element
Name: T-box
RFAM: RF00230
Regulation mode:
Biological process: Amino acid metabolism
Effector: Val-tRNA
Phylum: Deinococcus-Thermus
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Deinococcus radiodurans R1 2 1
Deinococcus geothermalis DSM 11300
Deinococcus deserti VCD115 2 1
Thermus thermophilus HB27
Thermus aquaticus Y51MC23
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
DR0149
*
Deinococcus radiodurans R1

Site:
position = -154
score = 62.58
sequence = GAGGGCAGCAGTGAC...

Gene: DR0149: Nudix dNTPase DR0149 (EC 3.6.1.-)
 
Deinococcus geothermalis DSM 11300
*
Deinococcus deserti VCD115

Site:
position = -342
score = 48.09
sequence = CCTGAGCAGTGACCG...

Gene: Deide_06710: Nudix dNTPase DR0149 (EC 3.6.1.-)
 
Thermus thermophilus HB27
 
Thermus aquaticus Y51MC23
Nudix dNTPase DR0149 (EC 3.6.1.-)
valS
 
Deinococcus radiodurans R1

Gene: DR0148: Valyl-tRNA synthetase (EC 6.1.1.9)
 
Deinococcus geothermalis DSM 11300

Gene: Dgeo_1951: Valyl-tRNA synthetase (EC 6.1.1.9)
 
Deinococcus deserti VCD115

Gene: Deide_06720: Valyl-tRNA synthetase (EC 6.1.1.9)
 
Thermus thermophilus HB27

Gene: TTC0805: Valyl-tRNA synthetase (EC 6.1.1.9)
 
Thermus aquaticus Y51MC23

Gene: TaqDRAFT_3518: Valyl-tRNA synthetase (EC 6.1.1.9)
Valyl-tRNA synthetase (EC 6.1.1.9)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD