Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog RhaR - Chloroflexia

Properties
Regulator type: Transcription factor
Regulator family: DeoR
Regulation mode: repressor
Biological process: Rhamnose utilization
Effector: Rhamnose
Phylum: Chloroflexi
Visualization:
Allows to visualize regulog content in the context of metabolic pathways
Built upon 12 sites [see more]
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Chloroflexus sp. Y-400-fl 9 1
Chloroflexus aggregans DSM 9485 9 1
Roseiflexus castenholzii DSM 13941 5 1
Roseiflexus sp. RS-1 8 1
Herpetosiphon aurantiacus ATCC 23779
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
rhaR
*
Chloroflexus sp. Y-400-fl

Site:
position = -71
score = 6.65008
sequence = TTGACA-(4)-TTGAAA

Site:
position = -81
score = 6.50717
sequence = TCGTAA-(4)-TTGACA

Site:
position = -91
score = 6.79033
sequence = TCGTAA-(4)-TCGTAA

Gene: Chy400_2467: Transcriptional regulator of rhamnose utilization, DeoR family
*
Chloroflexus aggregans DSM 9485

Site:
position = -140
score = 7.21639
sequence = TCGTAA-(4)-TCGAAA

Site:
position = -130
score = 6.93323
sequence = TCGAAA-(4)-TTGACA

Site:
position = -120
score = 6.65008
sequence = TTGACA-(4)-TTGAAA

Gene: Cagg_3309: Transcriptional regulator of rhamnose utilization, DeoR family
*
Roseiflexus castenholzii DSM 13941

Site:
position = -58
score = 6.93323
sequence = TTGACA-(4)-TCGAAA

Site:
position = -68
score = 6.31209
sequence = CCGAAA-(4)-TTGACA

Site:
position = -78
score = 7.02131
sequence = TCGAAA-(4)-CCGAAA

Gene: Rcas_3457: Transcriptional regulator of rhamnose utilization, DeoR family
*
Roseiflexus sp. RS-1

Site:
position = -74
score = 6.93323
sequence = TTGACA-(4)-TCGAAA

Site:
position = -94
score = 7.64245
sequence = TCGAAA-(4)-TCGAAA

Site:
position = -84
score = 6.93323
sequence = TCGAAA-(4)-TTGACA

Gene: RoseRS_2724: Transcriptional regulator of rhamnose utilization, DeoR family
 
Herpetosiphon aurantiacus ATCC 23779
Transcriptional regulator of rhamnose utilization, DeoR family
rhaG
 
Chloroflexus sp. Y-400-fl

Gene: Chy400_2466: L-rhamnose ABC transporter, duplicated ATP-binding component
 
Chloroflexus aggregans DSM 9485

Gene: Cagg_3310: L-rhamnose ABC transporter, duplicated ATP-binding component
 
Roseiflexus castenholzii DSM 13941
 
Roseiflexus sp. RS-1

Gene: RoseRS_2725: L-rhamnose ABC transporter, duplicated ATP-binding component
 
Herpetosiphon aurantiacus ATCC 23779
L-rhamnose ABC transporter, duplicated ATP-binding component
rhaH
 
Chloroflexus sp. Y-400-fl

Gene: Chy400_2465: L-rhamnose ABC transporter, permease component 1
 
Chloroflexus aggregans DSM 9485

Gene: Cagg_3311: L-rhamnose ABC transporter, permease component 1
 
Roseiflexus castenholzii DSM 13941
 
Roseiflexus sp. RS-1

Gene: RoseRS_2726: L-rhamnose ABC transporter, permease component 1
 
Herpetosiphon aurantiacus ATCC 23779
L-rhamnose ABC transporter, permease component 1
rhaJ
 
Chloroflexus sp. Y-400-fl

Gene: Chy400_2464: L-rhamnose ABC transporter, permease component 2
 
Chloroflexus aggregans DSM 9485

Gene: Cagg_3312: L-rhamnose ABC transporter, permease component 2
 
Roseiflexus castenholzii DSM 13941
 
Roseiflexus sp. RS-1

Gene: RoseRS_2727: L-rhamnose ABC transporter, permease component 2
 
Herpetosiphon aurantiacus ATCC 23779
L-rhamnose ABC transporter, permease component 2
rhaF
 
Chloroflexus sp. Y-400-fl

Gene: Chy400_2463: L-rhamnose ABC transporter, duplicated periplasmic rhamnose-binding protein
 
Chloroflexus aggregans DSM 9485

Gene: Cagg_3313: L-rhamnose ABC transporter, duplicated periplasmic rhamnose-binding protein
 
Roseiflexus castenholzii DSM 13941
 
Roseiflexus sp. RS-1
 
Herpetosiphon aurantiacus ATCC 23779
L-rhamnose ABC transporter, duplicated periplasmic rhamnose-binding protein
rhaM
 
Chloroflexus sp. Y-400-fl

Gene: Chy400_2462: L-rhamnose mutarotase
 
Chloroflexus aggregans DSM 9485

Gene: Cagg_3314: L-rhamnose mutarotase
 
Roseiflexus castenholzii DSM 13941

Gene: Rcas_3456: L-rhamnose mutarotase
 
Roseiflexus sp. RS-1

Gene: RoseRS_2729: L-rhamnose mutarotase
 
Herpetosiphon aurantiacus ATCC 23779
L-rhamnose mutarotase
rhaA
 
Chloroflexus sp. Y-400-fl

Gene: Chy400_2461: L-rhamnose isomerase (EC 5.3.1.14)
 
Chloroflexus aggregans DSM 9485

Gene: Cagg_3315: L-rhamnose isomerase (EC 5.3.1.14)
 
Roseiflexus castenholzii DSM 13941

Gene: Rcas_3455: L-rhamnose isomerase (EC 5.3.1.14)
 
Roseiflexus sp. RS-1

Gene: RoseRS_2730: L-rhamnose isomerase (EC 5.3.1.14)
 
Herpetosiphon aurantiacus ATCC 23779
L-rhamnose isomerase (EC 5.3.1.14)
rhaEW
 
Chloroflexus sp. Y-400-fl

Gene: Chy400_2460: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / lactaldehyde dehydrogenase (EC 1.2.1.22)
 
Chloroflexus aggregans DSM 9485

Gene: Cagg_3316: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / lactaldehyde dehydrogenase (EC 1.2.1.22)
 
Roseiflexus castenholzii DSM 13941

Gene: Rcas_3454: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / lactaldehyde dehydrogenase (EC 1.2.1.22)
 
Roseiflexus sp. RS-1

Gene: RoseRS_2731: Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / lactaldehyde dehydrogenase (EC 1.2.1.22)
 
Herpetosiphon aurantiacus ATCC 23779
Rhamnulose-1-phosphate aldolase (EC 4.1.2.19) / lactaldehyde dehydrogenase (EC 1.2.1.22)
rhaB
 
Chloroflexus sp. Y-400-fl

Gene: Chy400_2459: Rhamnulokinase (EC 2.7.1.5)
 
Chloroflexus aggregans DSM 9485

Gene: Cagg_3317: Rhamnulokinase (EC 2.7.1.5)
 
Roseiflexus castenholzii DSM 13941

Gene: Rcas_3453: Rhamnulokinase (EC 2.7.1.5)
 
Roseiflexus sp. RS-1

Gene: RoseRS_2732: Rhamnulokinase (EC 2.7.1.5)
 
Herpetosiphon aurantiacus ATCC 23779
Rhamnulokinase (EC 2.7.1.5)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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