Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog TPP - Chloroflexia

Properties
Regulator type: RNA regulatory element
Name: TPP
RFAM: RF00059
Regulation mode:
Biological process: Thiamine biosynthesis
Effector: Thiamine pyrophosphate
Phylum: Chloroflexi
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Chloroflexus aggregans DSM 9485 7 2
Chloroflexus sp. Y-400-fl 11 4
Roseiflexus castenholzii DSM 13941 10 3
Roseiflexus sp. RS-1 14 4
Herpetosiphon aurantiacus ATCC 23779 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
thiB
 
Chloroflexus aggregans DSM 9485
 
Chloroflexus sp. Y-400-fl
 
Roseiflexus castenholzii DSM 13941
 
Roseiflexus sp. RS-1
*
Herpetosiphon aurantiacus ATCC 23779

Site:
position = -160
score = 78.25
sequence = ACAACCGCTAGGGGA...

Gene: Haur_0261: Thiamin ABC transporter, substrate-binding component
Thiamin ABC transporter, substrate-binding component
 
CRON 2.
COG0011
*
Chloroflexus aggregans DSM 9485

Site:
position = -184
score = 70.23
sequence = TATGTAGCGAGGGGT...

Gene: Cagg_3115: Cytoplasmic thiamin-binding component of thiamin ABC transporter, COG0011 family
*
Chloroflexus sp. Y-400-fl

Site:
position = -197
score = 67.7
sequence = TACGCGCTGCCAGGG...

Gene: Chy400_0456: Cytoplasmic thiamin-binding component of thiamin ABC transporter, COG0011 family
*
Roseiflexus castenholzii DSM 13941

Site:
position = -157
score = 58.1
sequence = AGGGGAGCCAGGTGA...

Gene: Rcas_0665: Cytoplasmic thiamin-binding component of thiamin ABC transporter, COG0011 family
*
Roseiflexus sp. RS-1

Site:
position = -218
score = 59.61
sequence = AGGGGAGCCAGGAGA...

Gene: RoseRS_0668: Cytoplasmic thiamin-binding component of thiamin ABC transporter, COG0011 family
 
Herpetosiphon aurantiacus ATCC 23779
Cytoplasmic thiamin-binding component of thiamin ABC transporter, COG0011 family
thiX
 
Chloroflexus aggregans DSM 9485

Gene: Cagg_3116: Hydroxymethylpyrimidine ABC transporter, transmembrane component
 
Chloroflexus sp. Y-400-fl

Gene: Chy400_0455: Hydroxymethylpyrimidine ABC transporter, transmembrane component
 
Roseiflexus castenholzii DSM 13941

Gene: Rcas_0666: Hydroxymethylpyrimidine ABC transporter, transmembrane component
 
Roseiflexus sp. RS-1

Gene: RoseRS_0669: Hydroxymethylpyrimidine ABC transporter, transmembrane component
 
Herpetosiphon aurantiacus ATCC 23779
Hydroxymethylpyrimidine ABC transporter, transmembrane component
thiY
 
Chloroflexus aggregans DSM 9485

Gene: Cagg_3117: Hydroxymethylpyrimidine ABC transporter, substrate-binding component
 
Chloroflexus sp. Y-400-fl

Gene: Chy400_0454: Hydroxymethylpyrimidine ABC transporter, substrate-binding component
 
Roseiflexus castenholzii DSM 13941

Gene: Rcas_0667: Hydroxymethylpyrimidine ABC transporter, substrate-binding component
 
Roseiflexus sp. RS-1

Gene: RoseRS_0670: Hydroxymethylpyrimidine ABC transporter, substrate-binding component
 
Herpetosiphon aurantiacus ATCC 23779
Hydroxymethylpyrimidine ABC transporter, substrate-binding component
thiZ
 
Chloroflexus aggregans DSM 9485

Gene: Cagg_3118: Hydroxymethylpyrimidine ABC transporter, ATPase component
 
Chloroflexus sp. Y-400-fl

Gene: Chy400_0453: Hydroxymethylpyrimidine ABC transporter, ATPase component
 
Roseiflexus castenholzii DSM 13941

Gene: Rcas_0668: Hydroxymethylpyrimidine ABC transporter, ATPase component
 
Roseiflexus sp. RS-1

Gene: RoseRS_0671: Hydroxymethylpyrimidine ABC transporter, ATPase component
 
Herpetosiphon aurantiacus ATCC 23779
Hydroxymethylpyrimidine ABC transporter, ATPase component
 
CRON 3.
thiE
 
Chloroflexus aggregans DSM 9485

Gene: Cagg_3166: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Chloroflexus sp. Y-400-fl

Gene: Chy400_0400: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
*
Roseiflexus castenholzii DSM 13941

Site:
position = -180
score = 71.73
sequence = GGCGCCACTGGGGGA...

Gene: Rcas_4121: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
*
Roseiflexus sp. RS-1

Site:
position = -183
score = 68.19
sequence = ACGGCGCCACTGGGG...

Gene: RoseRS_1927: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Herpetosiphon aurantiacus ATCC 23779

Gene: Haur_2443: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
thiM
*
Chloroflexus aggregans DSM 9485

Site:
position = -227
score = 64.76
sequence = ATAGATGCCAGGGGA...

Gene: Cagg_3165: Hydroxyethylthiazole kinase (EC 2.7.1.50)
*
Chloroflexus sp. Y-400-fl

Site:
position = -228
score = 61.84
sequence = ACTAATAAGCCAGGG...

Gene: Chy400_0401: Hydroxyethylthiazole kinase (EC 2.7.1.50)
 
Roseiflexus castenholzii DSM 13941

Gene: Rcas_4122: Hydroxyethylthiazole kinase (EC 2.7.1.50)
 
Roseiflexus sp. RS-1

Gene: RoseRS_1926: Hydroxyethylthiazole kinase (EC 2.7.1.50)
 
Herpetosiphon aurantiacus ATCC 23779

Gene: Haur_2444: Hydroxyethylthiazole kinase (EC 2.7.1.50)
Hydroxyethylthiazole kinase (EC 2.7.1.50)
thiW
 
Chloroflexus aggregans DSM 9485
 
Chloroflexus sp. Y-400-fl
 
Roseiflexus castenholzii DSM 13941

Gene: Rcas_4123: Substrate-specific component ThiW of predicted thiazole ECF transporter
 
Roseiflexus sp. RS-1

Gene: RoseRS_1925: Substrate-specific component ThiW of predicted thiazole ECF transporter
 
Herpetosiphon aurantiacus ATCC 23779

Gene: Haur_2442: Substrate-specific component ThiW of predicted thiazole ECF transporter
Substrate-specific component ThiW of predicted thiazole ECF transporter
ecfAA
 
Chloroflexus aggregans DSM 9485
 
Chloroflexus sp. Y-400-fl

Gene: Chy400_0858: Substrate-specific component ThiW of predicted thiazole ECF transporter/ ATPase component of general energizing module of ECF transporters / ATPase component of general energizing module of ECF transporters
 
Roseiflexus castenholzii DSM 13941

Gene: Rcas_4124: ATPase component of general energizing module of ECF transporters / ATPase component of general energizing module of ECF transporters
 2
Roseiflexus sp. RS-1

Gene: RoseRS_1924: ATPase component of general energizing module of ECF transporters

Gene: RoseRS_1923: ATPase component of general energizing module of ECF transporters
 
Herpetosiphon aurantiacus ATCC 23779

Gene: Haur_2441: ATPase component of general energizing module of ECF transporters / ATPase component of general energizing module of ECF transporters
ATPase component of general energizing module of ECF transporters / ATPase component of general energizing module of ECF transporters
ecfT
 
Chloroflexus aggregans DSM 9485
 
Chloroflexus sp. Y-400-fl

Gene: Chy400_0857: Transmembrane component of general energizing module of ECF transporters
 
Roseiflexus castenholzii DSM 13941

Gene: Rcas_4125: Transmembrane component of general energizing module of ECF transporters
 
Roseiflexus sp. RS-1

Gene: RoseRS_1922: Transmembrane component of general energizing module of ECF transporters
 
Herpetosiphon aurantiacus ATCC 23779

Gene: Haur_2440: Transmembrane component of general energizing module of ECF transporters
Transmembrane component of general energizing module of ECF transporters
thiD
 
Chloroflexus aggregans DSM 9485

Gene: Cagg_3167: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
 
Chloroflexus sp. Y-400-fl

Gene: Chy400_0399: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
 
Roseiflexus castenholzii DSM 13941

Gene: Rcas_4126: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
 
Roseiflexus sp. RS-1

Gene: RoseRS_1921: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
 
Herpetosiphon aurantiacus ATCC 23779

Gene: Haur_2438: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
Phosphomethylpyrimidine kinase (EC 2.7.4.7)
cytX
 
Chloroflexus aggregans DSM 9485
*
Chloroflexus sp. Y-400-fl

Site:
position = -202
score = 59.19
sequence = ACAGCGTGTATGAGG...

Gene: Chy400_0859: Predicted hydroxymethylpyrimidine transporter CytX
 
Roseiflexus castenholzii DSM 13941
*
Roseiflexus sp. RS-1

Site:
position = -175
score = 73.77
sequence = TAAGCGTGTATGAGG...

Gene: RoseRS_2771: Predicted hydroxymethylpyrimidine transporter CytX
 
Herpetosiphon aurantiacus ATCC 23779
Predicted hydroxymethylpyrimidine transporter CytX
 
CRON 4.
tenA
 
Chloroflexus aggregans DSM 9485
*
Chloroflexus sp. Y-400-fl

Site:
position = -193
score = 56.17
sequence = GTGTTCCGTAGGGGC...

Gene: Chy400_0862: Thiaminase II (EC 3.5.99.2)
*
Roseiflexus castenholzii DSM 13941

Site:
position = -241
score = 55.82
sequence = CAGTGTTCCGTAGGG...

Gene: Rcas_1431: Thiaminase II (EC 3.5.99.2)
*
Roseiflexus sp. RS-1

Site:
position = -221
score = 60.4
sequence = TACCGTTCCGTAGGG...

Gene: RoseRS_1028: Thiaminase II (EC 3.5.99.2)
 
Herpetosiphon aurantiacus ATCC 23779
Thiaminase II (EC 3.5.99.2)
Cagg_0487
 
Chloroflexus aggregans DSM 9485

Gene: Cagg_0487: hypothetical protein
 
Chloroflexus sp. Y-400-fl

Gene: Chy400_2977: hypothetical protein
 
Roseiflexus castenholzii DSM 13941

Gene: Rcas_1430: hypothetical protein
 
Roseiflexus sp. RS-1

Gene: RoseRS_1027: hypothetical protein
 
Herpetosiphon aurantiacus ATCC 23779
hypothetical protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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