Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog T-box(Val) - Clostridiaceae

Properties
Regulator type: RNA regulatory element
Name: T-box
RFAM: RF00230
Regulation mode:
Biological process: Amino acid metabolism
Effector: Val-tRNA
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Clostridium kluyveri DSM 555 1 1
Clostridium sp. SS2/1
Clostridium cellulolyticum H10 2 1
Clostridium phytofermentans ISDg 3 2
Clostridium tetani E88 1 1
Clostridium acetobutylicum ATCC 824 2 2
Clostridium botulinum A str. ATCC 3502 2 1
Clostridium novyi NT 1 1
Clostridium perfringens ATCC 13124 1 1
Clostridium difficile 630 1 1
Clostridium beijerincki NCIMB 8052 3 2
Clostridium sp. OhILAs 1 1
Clostridium sp. L2-50 3 2
Clostridium scindens ATCC 35704 4 2
Clostridium nexile DSM 1787 1 1
Clostridium leptum DSM 753
Clostridium hiranonis DSM 13275 1 1
Clostridium butyricum 5521 1 1
Clostridium bolteae ATCC BAA-613
Clostridium bartlettii DSM 16795 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
CD2125
 
Clostridium kluyveri DSM 555
 
Clostridium sp. SS2/1
 
Clostridium cellulolyticum H10
 
Clostridium phytofermentans ISDg
 
Clostridium tetani E88
 
Clostridium acetobutylicum ATCC 824
*
Clostridium botulinum A str. ATCC 3502

Site:
position = -298
score = 109.69
sequence = AAATAAAGCTTTGAA...

Gene: CBO3165: Acetyltransferase (GNAT) family protein
 
Clostridium novyi NT
 
Clostridium perfringens ATCC 13124
 
Clostridium difficile 630
 
Clostridium beijerincki NCIMB 8052
 
Clostridium sp. OhILAs
 
Clostridium sp. L2-50
 
Clostridium scindens ATCC 35704
 
Clostridium nexile DSM 1787
 
Clostridium leptum DSM 753
 
Clostridium hiranonis DSM 13275
 
Clostridium butyricum 5521
 
Clostridium bolteae ATCC BAA-613
 
Clostridium bartlettii DSM 16795
Acetyltransferase, GNAT family
valS
*
Clostridium kluyveri DSM 555

Site:
position = -268
score = 109.12
sequence = TGTAATCACTGTGAA...

Gene: CKL_3219: Valyl-tRNA synthetase (EC 6.1.1.9)
 
Clostridium sp. SS2/1
 
Clostridium cellulolyticum H10

Gene: Ccel_1199: Valyl-tRNA synthetase (EC 6.1.1.9)
*
Clostridium phytofermentans ISDg

Site:
position = -455
score = 90.13
sequence = TAAATGTAGTGATGG...

Gene: null: Valyl-tRNA synthetase (EC 6.1.1.9)
*
Clostridium tetani E88

Site:
position = -307
score = 103.96
sequence = AATAAAAGCTGTGAA...

Gene: CTC02302: Valyl-tRNA synthetase (EC 6.1.1.9)
*
Clostridium acetobutylicum ATCC 824

Site:
position = -268
score = 120.28
sequence = AATATAAACGCTGAA...

Gene: CAC2399: Valyl-tRNA synthetase (EC 6.1.1.9)
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO3164: Valyl-tRNA synthetase (EC 6.1.1.9)
*
Clostridium novyi NT

Site:
position = -282
score = 107.6
sequence = TAAAAACAGAGAAAA...

Gene: NT01CX_1727: Valyl-tRNA synthetase (EC 6.1.1.9)
*
Clostridium perfringens ATCC 13124

Site:
position = -446
score = 117.86
sequence = GATACAAACAGTGAT...

Gene: CPF_2175: Valyl-tRNA synthetase (EC 6.1.1.9)
*
Clostridium difficile 630

Site:
position = -339
score = 97.55
sequence = ATTAAAGACTGAGAA...

Gene: CD3256: Valyl-tRNA synthetase (EC 6.1.1.9)
*
Clostridium beijerincki NCIMB 8052

Site:
position = -495
score = 80.34
sequence = CTAAATCATAGATTT...

Gene: Cbei_1782: Valyl-tRNA synthetase (EC 6.1.1.9)
*
Clostridium sp. OhILAs

Site:
position = -283
score = 128.02
sequence = GATATCAACAATGAT...

Gene: Clos_2038: Valyl-tRNA synthetase (EC 6.1.1.9)
*
Clostridium sp. L2-50

Site:
position = -178
score = 106.59
sequence = CATAAATGCAAGGAA...

Gene: CLOL250_01610: Valyl-tRNA synthetase (EC 6.1.1.9)
*
Clostridium scindens ATCC 35704

Site:
position = -335
score = 97.97
sequence = CGTAAAGGCATTGAA...

Gene: CLOSCI_02273: Valyl-tRNA synthetase (EC 6.1.1.9)
*
Clostridium nexile DSM 1787

Site:
position = -195
score = 94.78
sequence = GCAAAAGGTAATGAG...

Gene: CLONEX_03903: Valyl-tRNA synthetase (EC 6.1.1.9)
 
Clostridium leptum DSM 753
*
Clostridium hiranonis DSM 13275

Site:
position = -377
score = 123.63
sequence = TACAGACGTTGAAGA...

Gene: CLOHIR_00746: Valyl-tRNA synthetase (EC 6.1.1.9)
*
Clostridium butyricum 5521

Site:
position = -443
score = 107.35
sequence = TAAAAGCAATGATAA...

Gene: CBY_0347: Valyl-tRNA synthetase (EC 6.1.1.9)
 
Clostridium bolteae ATCC BAA-613
*
Clostridium bartlettii DSM 16795

Site:
position = -383
score = 108.17
sequence = AAAAGACTGAGAAAA...

Gene: CLOBAR_00333: Valyl-tRNA synthetase (EC 6.1.1.9)
Valyl-tRNA synthetase (EC 6.1.1.9)
Ccel_1198
 
Clostridium kluyveri DSM 555
 
Clostridium sp. SS2/1
*
Clostridium cellulolyticum H10

Site:
position = -283
score = 102.13
sequence = TAAAGGCTGTGAATA...

Gene: Ccel_1198: hypothetical protein
 
Clostridium phytofermentans ISDg
 
Clostridium tetani E88
 
Clostridium acetobutylicum ATCC 824
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium novyi NT
 
Clostridium perfringens ATCC 13124
 
Clostridium difficile 630
 
Clostridium beijerincki NCIMB 8052
 
Clostridium sp. OhILAs
 
Clostridium sp. L2-50
 
Clostridium scindens ATCC 35704
 
Clostridium nexile DSM 1787
 
Clostridium leptum DSM 753
 
Clostridium hiranonis DSM 13275
 
Clostridium butyricum 5521
 
Clostridium bolteae ATCC BAA-613
 
Clostridium bartlettii DSM 16795
hypothetical protein
 
CRON 2.
ilvD
 
Clostridium kluyveri DSM 555
 
Clostridium sp. SS2/1
 
Clostridium cellulolyticum H10
*
Clostridium phytofermentans ISDg

Site:
position = -348
score = 50.36
sequence = ACTTATAGCCATATG...

Gene: Cphy_3348: Dihydroxy-acid dehydratase (EC 4.2.1.9)
 
Clostridium tetani E88
 
Clostridium acetobutylicum ATCC 824
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium novyi NT
 
Clostridium perfringens ATCC 13124
 
Clostridium difficile 630
 
Clostridium beijerincki NCIMB 8052
 
Clostridium sp. OhILAs
 
Clostridium sp. L2-50
 
Clostridium scindens ATCC 35704
 
Clostridium nexile DSM 1787
 
Clostridium leptum DSM 753
 
Clostridium hiranonis DSM 13275
 
Clostridium butyricum 5521
 
Clostridium bolteae ATCC BAA-613
 
Clostridium bartlettii DSM 16795
Dihydroxy-acid dehydratase (EC 4.2.1.9)
ilvB
 
Clostridium kluyveri DSM 555
 
Clostridium sp. SS2/1
 
Clostridium cellulolyticum H10
 
Clostridium phytofermentans ISDg

Gene: Cphy_3347: Acetolactate synthase large subunit (EC 2.2.1.6)
 
Clostridium tetani E88
 
Clostridium acetobutylicum ATCC 824
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium novyi NT
 
Clostridium perfringens ATCC 13124
 
Clostridium difficile 630
*
Clostridium beijerincki NCIMB 8052

Site:
position = -402
score = 106.83
sequence = TAAAAACTGTGAAGA...

Gene: Cbei_2646: Acetolactate synthase large subunit (EC 2.2.1.6)
 
Clostridium sp. OhILAs
 
Clostridium sp. L2-50
 
Clostridium scindens ATCC 35704
 
Clostridium nexile DSM 1787
 
Clostridium leptum DSM 753
 
Clostridium hiranonis DSM 13275
 
Clostridium butyricum 5521
 
Clostridium bolteae ATCC BAA-613
 
Clostridium bartlettii DSM 16795
Acetolactate synthase large subunit (EC 2.2.1.6)
ilvH1
 
Clostridium kluyveri DSM 555
 
Clostridium sp. SS2/1
 
Clostridium cellulolyticum H10
 
Clostridium phytofermentans ISDg
 
Clostridium tetani E88
 
Clostridium acetobutylicum ATCC 824
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium novyi NT
 
Clostridium perfringens ATCC 13124
 
Clostridium difficile 630
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_2647: Acetolactate synthase small subunit (EC 2.2.1.6)
 
Clostridium sp. OhILAs
 
Clostridium sp. L2-50
 
Clostridium scindens ATCC 35704
 
Clostridium nexile DSM 1787
 
Clostridium leptum DSM 753
 
Clostridium hiranonis DSM 13275
 
Clostridium butyricum 5521
 
Clostridium bolteae ATCC BAA-613
 
Clostridium bartlettii DSM 16795
Acetolactate synthase small subunit (EC 2.2.1.6)
 
CRON 3.
ilvB1
 
Clostridium kluyveri DSM 555
 
Clostridium sp. SS2/1

Gene: CLOSS21_00852: Acetolactate synthase large subunit (EC 2.2.1.6)
 
Clostridium cellulolyticum H10
 
Clostridium phytofermentans ISDg
 
Clostridium tetani E88
 
Clostridium acetobutylicum ATCC 824
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium novyi NT
 
Clostridium perfringens ATCC 13124
 
Clostridium difficile 630
 
Clostridium beijerincki NCIMB 8052
 
Clostridium sp. OhILAs
*
Clostridium sp. L2-50

Site:
position = -352
score = 111.61
sequence = GTCAAATGCAATGAC...

Gene: CLOL250_00238: Acetolactate synthase large subunit (EC 2.2.1.6)
*
Clostridium scindens ATCC 35704

Site:
position = -326
score = 103.43
sequence = GAAATGCTATGACAA...

Gene: CLOSCI_01159: Acetolactate synthase large subunit (EC 2.2.1.6)
 
Clostridium nexile DSM 1787

Gene: CLONEX_03220: Acetolactate synthase large subunit (EC 2.2.1.6)
 
Clostridium leptum DSM 753
 
Clostridium hiranonis DSM 13275
 
Clostridium butyricum 5521
 
Clostridium bolteae ATCC BAA-613
 
Clostridium bartlettii DSM 16795

Gene: CLOBAR_00918: Acetolactate synthase large subunit (EC 2.2.1.6)
Acetolactate synthase large subunit (EC 2.2.1.6)
ilvH2
 
Clostridium kluyveri DSM 555
 
Clostridium sp. SS2/1

Gene: CLOSS21_00851: Acetolactate synthase small subunit (EC 2.2.1.6)
 
Clostridium cellulolyticum H10
 
Clostridium phytofermentans ISDg
 
Clostridium tetani E88
 
Clostridium acetobutylicum ATCC 824
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium novyi NT
 
Clostridium perfringens ATCC 13124
 
Clostridium difficile 630
 
Clostridium beijerincki NCIMB 8052
 
Clostridium sp. OhILAs
 
Clostridium sp. L2-50

Gene: CLOL250_00237: Acetolactate synthase small subunit (EC 2.2.1.6)
 
Clostridium scindens ATCC 35704

Gene: CLOSCI_01160: Acetolactate synthase small subunit (EC 2.2.1.6)
 
Clostridium nexile DSM 1787

Gene: CLONEX_03219: Acetolactate synthase small subunit (EC 2.2.1.6)
 
Clostridium leptum DSM 753
 
Clostridium hiranonis DSM 13275
 
Clostridium butyricum 5521
 
Clostridium bolteae ATCC BAA-613
 
Clostridium bartlettii DSM 16795

Gene: CLOBAR_00919: Acetolactate synthase small subunit (EC 2.2.1.6)
Acetolactate synthase small subunit (EC 2.2.1.6)
ilvE1
 
Clostridium kluyveri DSM 555
 
Clostridium sp. SS2/1

Gene: CLOSS21_00092: Branched-chain amino acid aminotransferase (EC 2.6.1.42)
 
Clostridium cellulolyticum H10
 
Clostridium phytofermentans ISDg
 
Clostridium tetani E88
 
Clostridium acetobutylicum ATCC 824
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium novyi NT
 
Clostridium perfringens ATCC 13124

Gene: CPF_1772: Branched-chain amino acid aminotransferase (EC 2.6.1.42)
 
Clostridium difficile 630
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_1043: Branched-chain amino acid aminotransferase (EC 2.6.1.42)
 
Clostridium sp. OhILAs

Gene: Clos_0407: Branched-chain amino acid aminotransferase (EC 2.6.1.42)
 
Clostridium sp. L2-50

Gene: CLOL250_00400: Branched-chain amino acid aminotransferase (EC 2.6.1.42)
 
Clostridium scindens ATCC 35704

Gene: CLOSCI_01161: Branched-chain amino acid aminotransferase (EC 2.6.1.42)
 
Clostridium nexile DSM 1787

Gene: CLONEX_03218: Branched-chain amino acid aminotransferase (EC 2.6.1.42)
 
Clostridium leptum DSM 753
 
Clostridium hiranonis DSM 13275
 
Clostridium butyricum 5521

Gene: CBY_0273: Branched-chain amino acid aminotransferase (EC 2.6.1.42)
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_04945: Branched-chain amino acid aminotransferase (EC 2.6.1.42)
 
Clostridium bartlettii DSM 16795
Branched-chain amino acid aminotransferase (EC 2.6.1.42)
 
CRON 4.
ilvC
 2
Clostridium kluyveri DSM 555

Gene: CKL_1080: Ketol-acid reductoisomerase (EC 1.1.1.86)

Gene: CKL_1089: Ketol-acid reductoisomerase (EC 1.1.1.86)
 
Clostridium sp. SS2/1

Gene: CLOSS21_01058: Ketol-acid reductoisomerase (EC 1.1.1.86)
 
Clostridium cellulolyticum H10

Gene: Ccel_3435: Ketol-acid reductoisomerase (EC 1.1.1.86)
 
Clostridium phytofermentans ISDg

Gene: null: Ketol-acid reductoisomerase (EC 1.1.1.86)
 
Clostridium tetani E88
*
Clostridium acetobutylicum ATCC 824

Site:
position = -393
score = 107.79
sequence = CAAAGACAATGATGA...

Gene: CAC0091: Ketol-acid reductoisomerase (EC 1.1.1.86)
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium novyi NT

Gene: NT01CX_2028: Ketol-acid reductoisomerase (EC 1.1.1.86)
 
Clostridium perfringens ATCC 13124
 
Clostridium difficile 630

Gene: CD1565: Ketol-acid reductoisomerase (EC 1.1.1.86)
 
Clostridium beijerincki NCIMB 8052
 
Clostridium sp. OhILAs
 
Clostridium sp. L2-50

Gene: CLOL250_00225: Ketol-acid reductoisomerase (EC 1.1.1.86)
 
Clostridium scindens ATCC 35704

Gene: CLOSCI_00393: Ketol-acid reductoisomerase (EC 1.1.1.86)
 
Clostridium nexile DSM 1787

Gene: CLONEX_01516: Ketol-acid reductoisomerase (EC 1.1.1.86)
 
Clostridium leptum DSM 753

Gene: CLOLEP_00058: Ketol-acid reductoisomerase (EC 1.1.1.86)
 
Clostridium hiranonis DSM 13275

Gene: CLOHIR_01818: Ketol-acid reductoisomerase (EC 1.1.1.86)
 
Clostridium butyricum 5521

Gene: CBY_2921: Ketol-acid reductoisomerase (EC 1.1.1.86)
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_05328: Ketol-acid reductoisomerase (EC 1.1.1.86)
 
Clostridium bartlettii DSM 16795

Gene: CLOBAR_01659: Ketol-acid reductoisomerase (EC 1.1.1.86)
Ketol-acid reductoisomerase (EC 1.1.1.86)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD