Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog T-box(Val) - Lactobacillaceae

Properties
Regulator type: RNA regulatory element
Name: T-box
RFAM: RF00230
Regulation mode:
Biological process: Amino acid metabolism
Effector: Val-tRNA
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Oenococcus oeni PSU-1 1 1
Lactobacillus reuteri JCM 1112 1 1
Lactobacillus helveticus DPC 4571 1 1
Lactobacillus fermentum IFO 3956 2 2
Lactobacillus salivarius subsp. salivarius UCC118 1 1
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 1 1
Lactobacillus acidophilus NCFM 3 2
Lactobacillus johnsonii NCC 533 1 1
Lactobacillus plantarum WCFS1 2 2
Lactobacillus casei ATCC 334 2 2
Lactobacillus brevis ATCC 367 2 2
Lactobacillus sakei subsp. sakei 23K 1 1
Pediococcus pentosaceus ATCC 25745 1 1
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 1 1
Lactobacillus rhamnosus GG 2 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
brnQ
 
Oenococcus oeni PSU-1
 
Lactobacillus reuteri JCM 1112

Gene: LAR_1569: Branched-chain amino acid transport system carrier protein
 
Lactobacillus helveticus DPC 4571
*
Lactobacillus fermentum IFO 3956

Site:
position = -329
score = 82.34
sequence = GAAACACGGTGAACA...

Gene: LAF_0278: Branched-chain amino acid transport system carrier protein
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
*2
Lactobacillus acidophilus NCFM

Site:
position = -300
score = 102.06
sequence = TACACACTATGAATA...

Gene: LBA1222: Branched-chain amino acid transport system carrier protein

Gene: LBA1224: Branched-chain amino acid transport system carrier protein
 
Lactobacillus johnsonii NCC 533
*
Lactobacillus plantarum WCFS1

Site:
position = -444
score = 99.22
sequence = TAAACGTGATGATCA...

Gene: lp_0399: Branched-chain amino acid transport system carrier protein
*
Lactobacillus casei ATCC 334

Site:
position = -356
score = 86.33
sequence = ACTAAAAACGATGAG...

Gene: LSEI_0248: Branched-chain amino acid transport system carrier protein
*
Lactobacillus brevis ATCC 367

Site:
position = -290
score = 78.04
sequence = TTATAAAACGTTGAA...

Gene: LVIS_2119: Branched-chain amino acid transport system carrier protein
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
*
Lactobacillus rhamnosus GG

Site:
position = -339
score = 85.89
sequence = TTCAAAAACGATGAG...

Gene: LGG_00292: Branched-chain amino acid transport system carrier protein
Branched-chain amino acid transport system carrier protein
 
CRON 2.
valS
*
Oenococcus oeni PSU-1

Site:
position = -327
score = 68.29
sequence = ATACTAATAGTCAAC...

Gene: OEOE_1392: Valyl-tRNA synthetase (EC 6.1.1.9)
*
Lactobacillus reuteri JCM 1112

Site:
position = -283
score = 118.28
sequence = AATAAGCATTGACCG...

Gene: LAR_0490: Valyl-tRNA synthetase (EC 6.1.1.9)
*
Lactobacillus helveticus DPC 4571

Site:
position = -242
score = 73.55
sequence = CCAAAGCAAGAATCA...

Gene: lhv_0841: Valyl-tRNA synthetase (EC 6.1.1.9)
*
Lactobacillus fermentum IFO 3956

Site:
position = -264
score = 119.36
sequence = TCAATGCGATGAACG...

Gene: LAF_0497: Valyl-tRNA synthetase (EC 6.1.1.9)
*
Lactobacillus salivarius subsp. salivarius UCC118

Site:
position = -263
score = 106.01
sequence = CATATAAGCAATGAA...

Gene: LSL_1072: Valyl-tRNA synthetase (EC 6.1.1.9)
*
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Site:
position = -231
score = 63.69
sequence = ACAAAGCCAAGATCA...

Gene: LBUL_0659: Valyl-tRNA synthetase (EC 6.1.1.9)
*
Lactobacillus acidophilus NCFM

Site:
position = -246
score = 86.37
sequence = ACAAAGCCATAATCA...

Gene: LBA0794: Valyl-tRNA synthetase (EC 6.1.1.9)
*
Lactobacillus johnsonii NCC 533

Site:
position = -250
score = 88.96
sequence = ACAAAGCAAGAATCA...

Gene: LJ0958: Valyl-tRNA synthetase (EC 6.1.1.9)
*
Lactobacillus plantarum WCFS1

Site:
position = -287
score = 109.76
sequence = ACAACCAGCAATGAG...

Gene: lp_2322: Valyl-tRNA synthetase (EC 6.1.1.9)
*
Lactobacillus casei ATCC 334

Site:
position = -291
score = 114.89
sequence = CTAATGCAATGATCA...

Gene: LSEI_1251: Valyl-tRNA synthetase (EC 6.1.1.9)
*
Lactobacillus brevis ATCC 367

Site:
position = -281
score = 121.26
sequence = AAAACTAGCGTTGAA...

Gene: LVIS_1253: Valyl-tRNA synthetase (EC 6.1.1.9)
*
Lactobacillus sakei subsp. sakei 23K

Site:
position = -272
score = 101.54
sequence = ACAACGCGTTGAACA...

Gene: LSA0849: Valyl-tRNA synthetase (EC 6.1.1.9)
*
Pediococcus pentosaceus ATCC 25745

Site:
position = -258
score = 90.45
sequence = TCTGAAGGTTATGAC...

Gene: PEPE_1291: Valyl-tRNA synthetase (EC 6.1.1.9)
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Site:
position = -234
score = 76.91
sequence = AATAATCTTAGAGGA...

Gene: LEUM_0322: Valyl-tRNA synthetase (EC 6.1.1.9)
*
Lactobacillus rhamnosus GG

Site:
position = -332
score = 113.23
sequence = CTAATGCAATGATCA...

Gene: LGG_01261: Valyl-tRNA synthetase (EC 6.1.1.9)
Valyl-tRNA synthetase (EC 6.1.1.9)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD