Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Regulog T-box(Tyr) - Clostridiaceae

Properties
Regulator type: RNA regulatory element
Name: T-box
RFAM: RF00230
Regulation mode:
Biological process: Amino acid metabolism
Effector: Tyr-tRNA
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Clostridium kluyveri DSM 555
Clostridium sp. SS2/1
Clostridium cellulolyticum H10 2 2
Clostridium phytofermentans ISDg 1 1
Clostridium tetani E88
Clostridium acetobutylicum ATCC 824 1 1
Clostridium botulinum A str. ATCC 3502
Clostridium novyi NT 1 1
Clostridium perfringens ATCC 13124
Clostridium difficile 630 1 1
Clostridium beijerincki NCIMB 8052 1 1
Clostridium sp. OhILAs 1 1
Clostridium sp. L2-50
Clostridium scindens ATCC 35704 1 1
Clostridium nexile DSM 1787 1 1
Clostridium leptum DSM 753 1 1
Clostridium hiranonis DSM 13275 1 1
Clostridium butyricum 5521
Clostridium bolteae ATCC BAA-613 2 2
Clostridium bartlettii DSM 16795 2 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
aroA
 
Clostridium kluyveri DSM 555
 
Clostridium sp. SS2/1
*2
Clostridium cellulolyticum H10

Site:
position = -351
score = 103.57
sequence = TAAATGTGATGAATG...

Gene: Ccel_2071: 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I beta (EC 2.5.1.54) # AroAI beta

Gene: Ccel_2880: 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I beta (EC 2.5.1.54) # AroAI beta
 
Clostridium phytofermentans ISDg

Gene: null: 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I beta (EC 2.5.1.54) # AroAI beta
 
Clostridium tetani E88
 
Clostridium acetobutylicum ATCC 824
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium novyi NT
 
Clostridium perfringens ATCC 13124
 
Clostridium difficile 630
 
Clostridium beijerincki NCIMB 8052
 
Clostridium sp. OhILAs
 
Clostridium sp. L2-50
 
Clostridium scindens ATCC 35704
 
Clostridium nexile DSM 1787
 
Clostridium leptum DSM 753

Gene: CLOLEP_01489: 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I beta (EC 2.5.1.54) # AroAI beta
 
Clostridium hiranonis DSM 13275
 
Clostridium butyricum 5521
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_01959: 2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I beta (EC 2.5.1.54) # AroAI beta
 
Clostridium bartlettii DSM 16795
2-keto-3-deoxy-D-arabino-heptulosonate-7-phosphate synthase I beta (EC 2.5.1.54) # AroAI beta
 
CRON 2.
tyrS
 
Clostridium kluyveri DSM 555

Gene: CKL_0758: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1
 
Clostridium sp. SS2/1

Gene: CLOSS21_02624: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1
*
Clostridium cellulolyticum H10

Site:
position = -275
score = 88.6
sequence = TCAAACAGCTATGAT...

Gene: Ccel_2081: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1
 
Clostridium phytofermentans ISDg

Gene: null: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1
 
Clostridium tetani E88

Gene: CTC02446: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1
 
Clostridium acetobutylicum ATCC 824

Gene: CAC0637: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO3323: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1
*
Clostridium novyi NT

Site:
position = -279
score = 116.18
sequence = GAAAGATTTTGATGG...

Gene: NT01CX_1364: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1
 
Clostridium perfringens ATCC 13124

Gene: CPF_0633: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1
 
Clostridium difficile 630
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_4615: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1
*
Clostridium sp. OhILAs

Site:
position = -249
score = 113.98
sequence = GCTAAAAACTTTGAA...

Gene: Clos_0921: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1
 
Clostridium sp. L2-50

Gene: CLOL250_02962: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1
*
Clostridium scindens ATCC 35704

Site:
position = -386
score = 89.62
sequence = AAAAGGCTATGAAAA...

Gene: CLOSCI_01439: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1
*
Clostridium nexile DSM 1787

Site:
position = -352
score = 107.5
sequence = AAACGGCGAAGAAAA...

Gene: CLONEX_01102: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1
*
Clostridium leptum DSM 753

Site:
position = -296
score = 129.51
sequence = CATATCGGCTGTGAA...

Gene: CLOLEP_03157: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1
 
Clostridium hiranonis DSM 13275
 
Clostridium butyricum 5521

Gene: CBY_1558: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1
*2
Clostridium bolteae ATCC BAA-613

Site:
position = -284
score = 117.78
sequence = AAAGAATGCCATGAA...

Gene: CLOBOL_06297: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1

Site:
position = -448
score = 70.16
sequence = TGAATTGGCTATGAC...

Gene: CLOBOL_03268: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1
*
Clostridium bartlettii DSM 16795

Site:
position = -291
score = 122.99
sequence = AAAAAGCTAAGATAA...

Gene: CLOBAR_01791: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1
Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1
 
CRON 3.
tyrZ
 
Clostridium kluyveri DSM 555

Gene: CKL_3527: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 2
 
Clostridium sp. SS2/1
 
Clostridium cellulolyticum H10
*
Clostridium phytofermentans ISDg

Site:
position = -425
score = 108.01
sequence = CATAGGCTATGATAA...

Gene: null: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 2
 
Clostridium tetani E88
*
Clostridium acetobutylicum ATCC 824

Site:
position = -324
score = 105.89
sequence = TAAATGCATTGAAGA...

Gene: CAC0780: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 2
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO1204: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 2
 
Clostridium novyi NT
 
Clostridium perfringens ATCC 13124
*
Clostridium difficile 630

Site:
position = -324
score = 115.29
sequence = TAAATGCTATGAAGA...

Gene: CD1521: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 2
*
Clostridium beijerincki NCIMB 8052

Site:
position = -353
score = 99.96
sequence = TAAAAGCAATGAAAA...

Gene: Cbei_2416: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 2
 
Clostridium sp. OhILAs
 
Clostridium sp. L2-50
 
Clostridium scindens ATCC 35704
 
Clostridium nexile DSM 1787
 
Clostridium leptum DSM 753
*
Clostridium hiranonis DSM 13275

Site:
position = -206
score = 107.7
sequence = CAAAGGCTGAGAAGA...

Gene: CLOHIR_01268: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 2
 
Clostridium butyricum 5521

Gene: CBY_2699: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 2
 
Clostridium bolteae ATCC BAA-613
*
Clostridium bartlettii DSM 16795

Site:
position = -78
score = 21.57
sequence = ATTAAGGTGGTAACG...

Gene: CLOBAR_01591: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 2
Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 2
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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