Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog T-box(Tyr) - Lactobacillaceae

Properties
Regulator type: RNA regulatory element
Name: T-box
RFAM: RF00230
Regulation mode:
Biological process: Amino acid metabolism
Effector: Tyr-tRNA
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Oenococcus oeni PSU-1 1 1
Lactobacillus reuteri JCM 1112 2 2
Lactobacillus helveticus DPC 4571 2 2
Lactobacillus fermentum IFO 3956 1 1
Lactobacillus salivarius subsp. salivarius UCC118 3 3
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 2 2
Lactobacillus acidophilus NCFM 2 2
Lactobacillus johnsonii NCC 533 2 2
Lactobacillus plantarum WCFS1 3 3
Lactobacillus casei ATCC 334 1 1
Lactobacillus brevis ATCC 367 5 3
Lactobacillus sakei subsp. sakei 23K 2 2
Pediococcus pentosaceus ATCC 25745 2 2
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 2 2
Lactobacillus rhamnosus GG 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
LVIS_2216
 
Oenococcus oeni PSU-1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1
 
Lactobacillus casei ATCC 334
*
Lactobacillus brevis ATCC 367

Site:
position = -459
score = 51.65
sequence = TAAGAAATCTTTCAA...

Gene: LVIS_2216: hypothetical protein
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Lactobacillus rhamnosus GG
hypothetical protein
PEPE_0593
 
Oenococcus oeni PSU-1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1
 
Lactobacillus casei ATCC 334
 
Lactobacillus brevis ATCC 367

Gene: LVIS_2215: hypothetical protein
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Lactobacillus rhamnosus GG
hypothetical protein
tyrS
*
Oenococcus oeni PSU-1

Site:
position = -209
score = 71.99
sequence = TCTCGGCTGATAGTA...

Gene: OEOE_1815: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1
*
Lactobacillus reuteri JCM 1112

Site:
position = -238
score = 69.3
sequence = CAAAGATGAAGAAGT...

Gene: LAR_0142: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1
*
Lactobacillus helveticus DPC 4571

Site:
position = -219
score = 49.91
sequence = TAACTAACGAATGAG...

Gene: lhv_0208: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1
*
Lactobacillus fermentum IFO 3956

Site:
position = -249
score = 61.52
sequence = TAGTTACATTGTGAT...

Gene: LAF_0068: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1
*
Lactobacillus salivarius subsp. salivarius UCC118

Site:
position = -242
score = 107.27
sequence = TATTAAAGCGATGAA...

Gene: LSL_1366: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1
*
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Site:
position = -222
score = 49.09
sequence = AAAACGCGACAATGA...

Gene: LBUL_0219: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1
*
Lactobacillus acidophilus NCFM

Site:
position = -222
score = 58.19
sequence = TCATTATTAACACAA...

Gene: LBA0192: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1
*
Lactobacillus johnsonii NCC 533

Site:
position = -206
score = 50.06
sequence = CATAGGTAATAATAG...

Gene: LJ0175: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1
*
Lactobacillus plantarum WCFS1

Site:
position = -249
score = 106.12
sequence = TTAAAAAGTAGTGAT...

Gene: lp_2807: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1
*
Lactobacillus casei ATCC 334

Site:
position = -432
score = 76.72
sequence = CATAAAGTCACCAGA...

Gene: LSEI_2031: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1
*2
Lactobacillus brevis ATCC 367

Gene: LVIS_2214: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1

Site:
position = -251
score = 99.57
sequence = CATAAGCAAAGAAGC...

Gene: LVIS_0424: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1
*
Lactobacillus sakei subsp. sakei 23K

Site:
position = -256
score = 66.94
sequence = AAATATCAATGACCG...

Gene: LSA0769: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1
*
Pediococcus pentosaceus ATCC 25745

Site:
position = -263
score = 100.75
sequence = ACGAAGCTTTGAAGT...

Gene: PEPE_0235: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Site:
position = -232
score = 87.59
sequence = ATTCATTACACTGAT...

Gene: LEUM_2044: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1
*
Lactobacillus rhamnosus GG

Site:
position = -294
score = 74.25
sequence = TATAAAATTTACCAG...

Gene: LGG_02017: Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1
Tyrosyl-tRNA synthetase (EC 6.1.1.1) ## cluster 1
 
CRON 2.
tyrT
 
Oenococcus oeni PSU-1
*2
Lactobacillus reuteri JCM 1112

Gene: LAR_0159: Predicted tyrosine transporter, NhaC family

Site:
position = -250
score = 61.07
sequence = ACAATTATCGTTTCA...

Gene: LAR_1714: Predicted tyrosine transporter, NhaC family
*
Lactobacillus helveticus DPC 4571

Site:
position = -243
score = 68.95
sequence = TCAACAATCAACGAC...

Gene: lhv_0562: Predicted tyrosine transporter, NhaC family
 
Lactobacillus fermentum IFO 3956

Gene: LAF_1456: Predicted tyrosine transporter, NhaC family
*2
Lactobacillus salivarius subsp. salivarius UCC118

Site:
position = -305
score = 78.05
sequence = TAATTCTAATGGAAC...

Gene: LSL_0931: Predicted tyrosine transporter, NhaC family

Site:
position = -317
score = 58.24
sequence = TCTTATTAATGATTT...

Gene: LSL_0855: Predicted tyrosine transporter, NhaC family
*
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Site:
position = -305
score = 57.7
sequence = AAAATTCGAGTGATC...

Gene: LBUL_1680: Predicted tyrosine transporter, NhaC family
*
Lactobacillus acidophilus NCFM

Site:
position = -237
score = 68.48
sequence = CAACAATTAACGAAA...

Gene: LBA0538: Predicted tyrosine transporter, NhaC family
*
Lactobacillus johnsonii NCC 533

Site:
position = -223
score = 59.59
sequence = TAATTATCGTCACAG...

Gene: LJ1701: Predicted tyrosine transporter, NhaC family
*2
Lactobacillus plantarum WCFS1

Site:
position = -362
score = 76.07
sequence = TAACTGTACGATAAC...

Gene: lp_3338: Predicted tyrosine transporter, NhaC family

Site:
position = -340
score = 65.35
sequence = ATAACGAACGATAAT...

Gene: lp_0192: Predicted tyrosine transporter, NhaC family
 
Lactobacillus casei ATCC 334
*2
Lactobacillus brevis ATCC 367

Site:
position = -278
score = 59.6
sequence = TAATTTCCATTACCA...

Gene: LVIS_0199: Predicted tyrosine transporter, NhaC family

Gene: LVIS_2211: Predicted tyrosine transporter, NhaC family
*
Lactobacillus sakei subsp. sakei 23K

Site:
position = -386
score = 61.36
sequence = TCATCTCATTCAAAC...

Gene: LSA1827: Predicted tyrosine transporter, NhaC family
*
Pediococcus pentosaceus ATCC 25745

Site:
position = -262
score = 64.2
sequence = CATTTTAACTTTCAC...

Gene: PEPE_1838: Predicted tyrosine transporter, NhaC family
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Site:
position = -262
score = 64.5
sequence = CATAAATACTAAGTA...

Gene: LEUM_2006: Predicted tyrosine transporter, NhaC family
 
Lactobacillus rhamnosus GG
Predicted tyrosine transporter, NhaC family
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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