Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog T-box(Thr) - Clostridiaceae

Properties
Regulator type: RNA regulatory element
Name: T-box
RFAM: RF00230
Regulation mode:
Biological process: Amino acid metabolism
Effector: Thr-tRNA
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Clostridium kluyveri DSM 555
Clostridium sp. SS2/1 1 1
Clostridium cellulolyticum H10 2 1
Clostridium phytofermentans ISDg 2 2
Clostridium tetani E88 1 1
Clostridium acetobutylicum ATCC 824 1 1
Clostridium botulinum A str. ATCC 3502 1 1
Clostridium novyi NT 1 1
Clostridium perfringens ATCC 13124 1 1
Clostridium difficile 630 1 1
Clostridium beijerincki NCIMB 8052 2 2
Clostridium sp. OhILAs 3 2
Clostridium sp. L2-50 1 1
Clostridium scindens ATCC 35704
Clostridium nexile DSM 1787 1 1
Clostridium leptum DSM 753 1 1
Clostridium hiranonis DSM 13275 1 1
Clostridium butyricum 5521 2 2
Clostridium bolteae ATCC BAA-613 1 1
Clostridium bartlettii DSM 16795 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
thrZ
 
Clostridium kluyveri DSM 555

Gene: CKL_3196: Threonyl-tRNA synthetase (EC 6.1.1.3)
*
Clostridium sp. SS2/1

Site:
position = -329
score = 102.86
sequence = AGAAAACGTTGATGA...

Gene: CLOSS21_01453: Threonyl-tRNA synthetase (EC 6.1.1.3)
*
Clostridium cellulolyticum H10

Site:
position = -251
score = 83.21
sequence = TAAAGGCGTTGACGA...

Gene: Ccel_1372: Threonyl-tRNA synthetase (EC 6.1.1.3)
*
Clostridium phytofermentans ISDg

Site:
position = -298
score = 93.74
sequence = AAGAAAAGCAATGAC...

Gene: null: Threonyl-tRNA synthetase (EC 6.1.1.3)
*
Clostridium tetani E88

Site:
position = -285
score = 112.78
sequence = GTTAAAGGCTAAGAA...

Gene: CTC02286: Threonyl-tRNA synthetase (EC 6.1.1.3)
*
Clostridium acetobutylicum ATCC 824

Site:
position = -270
score = 122.13
sequence = AATAAAGGCTTTGAA...

Gene: CAC2362: Threonyl-tRNA synthetase (EC 6.1.1.3)
*
Clostridium botulinum A str. ATCC 3502

Site:
position = -271
score = 113.43
sequence = TTTATAAACTATGAA...

Gene: CBO3138: Threonyl-tRNA synthetase (EC 6.1.1.3)
*
Clostridium novyi NT

Site:
position = -303
score = 95.09
sequence = TAAAGACAATGATAA...

Gene: NT01CX_1760: Threonyl-tRNA synthetase (EC 6.1.1.3)
 
Clostridium perfringens ATCC 13124
*
Clostridium difficile 630

Site:
position = -301
score = 90.55
sequence = TCATAGTGTTGAAGA...

Gene: CD0574: Threonyl-tRNA synthetase (EC 6.1.1.3)
*
Clostridium beijerincki NCIMB 8052

Site:
position = -394
score = 104.29
sequence = TTTTTAGGCAATGAA...

Gene: Cbei_3206: Threonyl-tRNA synthetase (EC 6.1.1.3)
*
Clostridium sp. OhILAs

Site:
position = -322
score = 99.19
sequence = TACTTTAGCATTGAA...

Gene: Clos_1980: Threonyl-tRNA synthetase (EC 6.1.1.3)
 
Clostridium sp. L2-50
 
Clostridium scindens ATCC 35704

Gene: CLOSCI_01251: Threonyl-tRNA synthetase (EC 6.1.1.3)
 
Clostridium nexile DSM 1787
 
Clostridium leptum DSM 753
*
Clostridium hiranonis DSM 13275

Site:
position = -308
score = 106.75
sequence = TATTAGCGATGAAAA...

Gene: CLOHIR_01888: Threonyl-tRNA synthetase (EC 6.1.1.3)
*
Clostridium butyricum 5521

Site:
position = -314
score = 99.12
sequence = TATAGGCAATGAAAG...

Gene: CBY_1429: Threonyl-tRNA synthetase (EC 6.1.1.3)
*
Clostridium bolteae ATCC BAA-613

Site:
position = -234
score = 60.9
sequence = AGCAAAGGCATTGAG...

Gene: CLOBOL_01887: Threonyl-tRNA synthetase (EC 6.1.1.3)
*
Clostridium bartlettii DSM 16795

Site:
position = -304
score = 107.55
sequence = TATAATTGCGATGAA...

Gene: CLOBAR_01310: Threonyl-tRNA synthetase (EC 6.1.1.3)
Threonyl-tRNA synthetase (EC 6.1.1.3)
thrS
 
Clostridium kluyveri DSM 555
 
Clostridium sp. SS2/1
 
Clostridium cellulolyticum H10

Gene: Ccel_1373: Threonyl-tRNA synthetase (EC 6.1.1.3)
*
Clostridium phytofermentans ISDg

Site:
position = -309
score = 97.09
sequence = ATAATACGTTGATGA...

Gene: null: Threonyl-tRNA synthetase (EC 6.1.1.3)
 
Clostridium tetani E88
 
Clostridium acetobutylicum ATCC 824
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium novyi NT
*
Clostridium perfringens ATCC 13124

Site:
position = -300
score = 99.03
sequence = TTAACACAATGAAGA...

Gene: CPF_2631: Threonyl-tRNA synthetase (EC 6.1.1.3)
 
Clostridium difficile 630
*
Clostridium beijerincki NCIMB 8052

Site:
position = -394
score = 56.15
sequence = AATAAACACGTTGAT...

Gene: Cbei_0293: Threonyl-tRNA synthetase (EC 6.1.1.3)
 
Clostridium sp. OhILAs
*
Clostridium sp. L2-50

Site:
position = -345
score = 87.21
sequence = GAATAACGTGTTGAT...

Gene: CLOL250_02259: Threonyl-tRNA synthetase (EC 6.1.1.3)
 
Clostridium scindens ATCC 35704
*
Clostridium nexile DSM 1787

Site:
position = -327
score = 98.7
sequence = AGAAAACACGTTGAT...

Gene: CLONEX_02841: Threonyl-tRNA synthetase (EC 6.1.1.3)
*
Clostridium leptum DSM 753

Site:
position = -241
score = 85.05
sequence = CAAAAACGTTGAGAA...

Gene: CLOLEP_03968: Threonyl-tRNA synthetase (EC 6.1.1.3)
 
Clostridium hiranonis DSM 13275
*
Clostridium butyricum 5521

Site:
position = -376
score = 57.05
sequence = AGATAACACGTTGAT...

Gene: CBY_3005: Threonyl-tRNA synthetase (EC 6.1.1.3)
 
Clostridium bolteae ATCC BAA-613
 
Clostridium bartlettii DSM 16795
Threonyl-tRNA synthetase (EC 6.1.1.3)
 
CRON 2.
Clos_0845
 
Clostridium kluyveri DSM 555
 
Clostridium sp. SS2/1
 
Clostridium cellulolyticum H10
 
Clostridium phytofermentans ISDg
 
Clostridium tetani E88
 
Clostridium acetobutylicum ATCC 824
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium novyi NT
 
Clostridium perfringens ATCC 13124
 
Clostridium difficile 630
 
Clostridium beijerincki NCIMB 8052
*
Clostridium sp. OhILAs

Site:
position = -439
score = 96.41
sequence = CAAAGACAGTGATGA...

Gene: Clos_0845: Membrane protein
 
Clostridium sp. L2-50
 
Clostridium scindens ATCC 35704
 
Clostridium nexile DSM 1787
 
Clostridium leptum DSM 753
 
Clostridium hiranonis DSM 13275
 
Clostridium butyricum 5521
 
Clostridium bolteae ATCC BAA-613
 
Clostridium bartlettii DSM 16795
Membrane protein
ilvA
 
Clostridium kluyveri DSM 555
 
Clostridium sp. SS2/1
 
Clostridium cellulolyticum H10
 
Clostridium phytofermentans ISDg
 
Clostridium tetani E88
 
Clostridium acetobutylicum ATCC 824
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium novyi NT
 
Clostridium perfringens ATCC 13124
 
Clostridium difficile 630
 
Clostridium beijerincki NCIMB 8052
 
Clostridium sp. OhILAs

Gene: Clos_0846: Threonine dehydratase (EC 4.3.1.19)
 
Clostridium sp. L2-50
 
Clostridium scindens ATCC 35704
 
Clostridium nexile DSM 1787
 
Clostridium leptum DSM 753
 
Clostridium hiranonis DSM 13275
 
Clostridium butyricum 5521
 
Clostridium bolteae ATCC BAA-613
 
Clostridium bartlettii DSM 16795
Threonine dehydratase (EC 4.3.1.19)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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