Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog T-box(Thr) - Lactobacillaceae

Properties
Regulator type: RNA regulatory element
Name: T-box
RFAM: RF00230
Regulation mode:
Biological process: Amino acid metabolism
Effector: Thr-tRNA
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Oenococcus oeni PSU-1 1 1
Lactobacillus reuteri JCM 1112 1 1
Lactobacillus helveticus DPC 4571 1 1
Lactobacillus fermentum IFO 3956 1 1
Lactobacillus salivarius subsp. salivarius UCC118 1 1
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 1 1
Lactobacillus acidophilus NCFM 1 1
Lactobacillus johnsonii NCC 533 1 1
Lactobacillus plantarum WCFS1 1 1
Lactobacillus casei ATCC 334 1 1
Lactobacillus brevis ATCC 367 1 1
Lactobacillus sakei subsp. sakei 23K 1 1
Pediococcus pentosaceus ATCC 25745 1 1
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 2 2
Lactobacillus rhamnosus GG 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
thrS
*
Oenococcus oeni PSU-1

Site:
position = -211
score = 63.56
sequence = TAAACATCGAGACCA...

Gene: OEOE_0460: Threonyl-tRNA synthetase (EC 6.1.1.3)
*
Lactobacillus reuteri JCM 1112

Site:
position = -199
score = 62.26
sequence = TCGATTGAAGGATAT...

Gene: LAR_1745: Threonyl-tRNA synthetase (EC 6.1.1.3)
*
Lactobacillus helveticus DPC 4571

Site:
position = -253
score = 37.77
sequence = ATAATGAGAGTTAAT...

Gene: lhv_1611: Threonyl-tRNA synthetase (EC 6.1.1.3)
*
Lactobacillus fermentum IFO 3956

Site:
position = -169
score = 57.27
sequence = CAAATGCGGGATACG...

Gene: LAF_1830: Threonyl-tRNA synthetase (EC 6.1.1.3)
*
Lactobacillus salivarius subsp. salivarius UCC118

Site:
position = -263
score = 50.8
sequence = TGTAGATTTTGTGAA...

Gene: LSL_0494: Threonyl-tRNA synthetase (EC 6.1.1.3)
*
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Site:
position = -239
score = 49.57
sequence = AGTAAATAGAAGACA...

Gene: LBUL_1401: Threonyl-tRNA synthetase (EC 6.1.1.3)
*
Lactobacillus acidophilus NCFM

Site:
position = -240
score = 36.89
sequence = ATTGAAATTAATTAA...

Gene: LBA1543: Threonyl-tRNA synthetase (EC 6.1.1.3)
*
Lactobacillus johnsonii NCC 533

Site:
position = -238
score = 40.3
sequence = AAAGTCAATGAAAGA...

Gene: LJ1645: Threonyl-tRNA synthetase (EC 6.1.1.3)
*
Lactobacillus plantarum WCFS1

Site:
position = -295
score = 65.29
sequence = GAAAACAGATGCAAA...

Gene: lp_1514: Threonyl-tRNA synthetase (EC 6.1.1.3)
*
Lactobacillus casei ATCC 334

Site:
position = -262
score = 59.72
sequence = GAAGCTATCGAAGAC...

Gene: LSEI_1703: Threonyl-tRNA synthetase (EC 6.1.1.3)
*
Lactobacillus brevis ATCC 367

Site:
position = -280
score = 60.16
sequence = CAAAAGAGCTATGAC...

Gene: LVIS_1036: Threonyl-tRNA synthetase (EC 6.1.1.3)
*
Lactobacillus sakei subsp. sakei 23K

Site:
position = -278
score = 62.99
sequence = GAGTCAATCAACGAT...

Gene: LSA1400: Threonyl-tRNA synthetase (EC 6.1.1.3)
*
Pediococcus pentosaceus ATCC 25745

Site:
position = -196
score = 55.7
sequence = TAAAACTTCCCACTT...

Gene: PEPE_0694: Threonyl-tRNA synthetase (EC 6.1.1.3)
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Site:
position = -294
score = 96.38
sequence = CAGAAACATTGATAA...

Gene: LEUM_0662: Threonyl-tRNA synthetase (EC 6.1.1.3)
*
Lactobacillus rhamnosus GG

Site:
position = -320
score = 55.57
sequence = GTAACTATCGAAGAC...

Gene: LGG_01754: Threonyl-tRNA synthetase (EC 6.1.1.3)
Threonyl-tRNA synthetase (EC 6.1.1.3)
 
CRON 2.
ansP
 
Oenococcus oeni PSU-1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1
 
Lactobacillus casei ATCC 334
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Site:
position = -312
score = 71.36
sequence = TAAAAACGTTGAAGA...

Gene: LEUM_0515: Amino acid transporter
 
Lactobacillus rhamnosus GG
Amino acid transporter
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD