Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog T-box(Ser) - Chloroflexia

Properties
Regulator type: RNA regulatory element
Name: T-box
RFAM: RF00230
Regulation mode:
Biological process: Amino acid metabolism
Effector: Ser-tRNA
Phylum: Chloroflexi
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Chloroflexus aggregans DSM 9485
Chloroflexus sp. Y-400-fl
Roseiflexus castenholzii DSM 13941 3 1
Roseiflexus sp. RS-1
Herpetosiphon aurantiacus ATCC 23779 4 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
Haur_4345
 
Chloroflexus aggregans DSM 9485
 
Chloroflexus sp. Y-400-fl
 
Roseiflexus castenholzii DSM 13941
 
Roseiflexus sp. RS-1
*
Herpetosiphon aurantiacus ATCC 23779

Site:
position = -274
score = 65.09
sequence = GCCACTGATGTTGAC...

Gene: Haur_4345: hypothetical protein
hypothetical protein
Haur_4344
 
Chloroflexus aggregans DSM 9485
 
Chloroflexus sp. Y-400-fl
 
Roseiflexus castenholzii DSM 13941
 
Roseiflexus sp. RS-1
 
Herpetosiphon aurantiacus ATCC 23779

Gene: Haur_4344: hypothetical protein
hypothetical protein
Haur_4343
 
Chloroflexus aggregans DSM 9485
 
Chloroflexus sp. Y-400-fl
 
Roseiflexus castenholzii DSM 13941
 
Roseiflexus sp. RS-1
 
Herpetosiphon aurantiacus ATCC 23779

Gene: Haur_4343: hypothetical protein
hypothetical protein
serS
 
Chloroflexus aggregans DSM 9485

Gene: Cagg_1426: Seryl-tRNA synthetase (EC 6.1.1.11)
 
Chloroflexus sp. Y-400-fl

Gene: Chy400_0475: Seryl-tRNA synthetase (EC 6.1.1.11)
 
Roseiflexus castenholzii DSM 13941

Gene: Rcas_1494: Seryl-tRNA synthetase (EC 6.1.1.11)
 
Roseiflexus sp. RS-1

Gene: RoseRS_3466: Seryl-tRNA synthetase (EC 6.1.1.11)
 
Herpetosiphon aurantiacus ATCC 23779

Gene: Haur_4342: Seryl-tRNA synthetase (EC 6.1.1.11)
Seryl-tRNA synthetase (EC 6.1.1.11)
Cagg_1428
 
Chloroflexus aggregans DSM 9485

Gene: Cagg_1428: NUDIX hydrolase
 
Chloroflexus sp. Y-400-fl

Gene: Chy400_0477: NUDIX hydrolase
*
Roseiflexus castenholzii DSM 13941

Site:
position = -392
score = 68.76
sequence = GCCAATGACGGTGAC...

Gene: Rcas_1496: NUDIX hydrolase
 
Roseiflexus sp. RS-1

Gene: RoseRS_3464: NUDIX hydrolase
 
Herpetosiphon aurantiacus ATCC 23779

Gene: Haur_0149: NUDIX hydrolase
NUDIX hydrolase
mutT
 
Chloroflexus aggregans DSM 9485

Gene: Cagg_1427: Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-)
 
Chloroflexus sp. Y-400-fl

Gene: Chy400_0476: Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-)
 
Roseiflexus castenholzii DSM 13941

Gene: Rcas_1495: Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-)
 
Roseiflexus sp. RS-1

Gene: RoseRS_3465: Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-)
 
Herpetosiphon aurantiacus ATCC 23779
Mutator mutT protein (7,8-dihydro-8-oxoguanine-triphosphatase) (EC 3.6.1.-)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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