Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog T-box(Ser) - Clostridiaceae

Properties
Regulator type: RNA regulatory element
Name: T-box
RFAM: RF00230
Regulation mode:
Biological process: Amino acid metabolism
Effector: Ser-tRNA
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Clostridium kluyveri DSM 555 2 1
Clostridium sp. SS2/1
Clostridium cellulolyticum H10 1 1
Clostridium phytofermentans ISDg 1 1
Clostridium tetani E88 3 2
Clostridium acetobutylicum ATCC 824 4 1
Clostridium botulinum A str. ATCC 3502 2 2
Clostridium novyi NT 3 2
Clostridium perfringens ATCC 13124 1 1
Clostridium difficile 630 1 1
Clostridium beijerincki NCIMB 8052 1 1
Clostridium sp. OhILAs 1 1
Clostridium sp. L2-50
Clostridium scindens ATCC 35704
Clostridium nexile DSM 1787
Clostridium leptum DSM 753
Clostridium hiranonis DSM 13275 1 1
Clostridium butyricum 5521 1 1
Clostridium bolteae ATCC BAA-613
Clostridium bartlettii DSM 16795
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
yurG
*
Clostridium kluyveri DSM 555

Site:
position = -299
score = 107.27
sequence = ATATTGTCTTATGAA...

Gene: CKL_3817: Serine--pyruvate aminotransferase (EC 2.6.1.51)
 
Clostridium sp. SS2/1
 
Clostridium cellulolyticum H10

Gene: Ccel_1188: Serine--pyruvate aminotransferase (EC 2.6.1.51)
 
Clostridium phytofermentans ISDg
*
Clostridium tetani E88

Site:
position = -275
score = 118.48
sequence = TTAAAAAGCACTGAA...

Gene: CTC00695: Serine--pyruvate aminotransferase (EC 2.6.1.51)
*
Clostridium acetobutylicum ATCC 824

Site:
position = -376
score = 108.21
sequence = ATAAACCGTTGAAGA...

Gene: CAC0014: Serine--pyruvate aminotransferase (EC 2.6.1.51)
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO1126: Serine--pyruvate aminotransferase (EC 2.6.1.51)
*
Clostridium novyi NT

Site:
position = -352
score = 110.48
sequence = TACAAAAGCTATGAA...

Gene: NT01CX_0729: Serine--pyruvate aminotransferase (EC 2.6.1.51)
 
Clostridium perfringens ATCC 13124

Gene: CPF_0060: Serine--pyruvate aminotransferase (EC 2.6.1.51)
 
Clostridium difficile 630

Gene: CD0994: Serine--pyruvate aminotransferase (EC 2.6.1.51)
 
Clostridium beijerincki NCIMB 8052
 
Clostridium sp. OhILAs
 
Clostridium sp. L2-50
 
Clostridium scindens ATCC 35704
 
Clostridium nexile DSM 1787
 
Clostridium leptum DSM 753
 
Clostridium hiranonis DSM 13275
 
Clostridium butyricum 5521
 
Clostridium bolteae ATCC BAA-613
 
Clostridium bartlettii DSM 16795

Gene: CLOBAR_01071: Serine--pyruvate aminotransferase (EC 2.6.1.51)
Serine--pyruvate aminotransferase (EC 2.6.1.51)
serA
 
Clostridium kluyveri DSM 555

Gene: CKL_3816: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Clostridium sp. SS2/1
 
Clostridium cellulolyticum H10

Gene: Ccel_1189: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Clostridium phytofermentans ISDg
 
Clostridium tetani E88

Gene: CTC00694: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Clostridium acetobutylicum ATCC 824

Gene: CAC0015: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO1127: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Clostridium novyi NT

Gene: NT01CX_0728: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Clostridium perfringens ATCC 13124

Gene: CPF_0061: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Clostridium difficile 630

Gene: CD0995: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_4927: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Clostridium sp. OhILAs
 
Clostridium sp. L2-50
 
Clostridium scindens ATCC 35704
 
Clostridium nexile DSM 1787
 
Clostridium leptum DSM 753
 
Clostridium hiranonis DSM 13275
 
Clostridium butyricum 5521

Gene: CBY_3791: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_02297: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
 
Clostridium bartlettii DSM 16795

Gene: CLOBAR_01070: D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
D-3-phosphoglycerate dehydrogenase (EC 1.1.1.95)
CAC0016
 
Clostridium kluyveri DSM 555
 
Clostridium sp. SS2/1
 
Clostridium cellulolyticum H10
 
Clostridium phytofermentans ISDg
 
Clostridium tetani E88
 
Clostridium acetobutylicum ATCC 824

Gene: CAC0016: Related to HTH domain of SpoOJ/ParA/ParB/repB family, involved in chromosome partitioning
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium novyi NT
 
Clostridium perfringens ATCC 13124
 
Clostridium difficile 630
 
Clostridium beijerincki NCIMB 8052
 
Clostridium sp. OhILAs
 
Clostridium sp. L2-50
 
Clostridium scindens ATCC 35704
 
Clostridium nexile DSM 1787
 
Clostridium leptum DSM 753
 
Clostridium hiranonis DSM 13275
 
Clostridium butyricum 5521
 
Clostridium bolteae ATCC BAA-613
 
Clostridium bartlettii DSM 16795
Related to HTH domain of SpoOJ/ParA/ParB/repB family, involved in chromosome partitioning
serS
 
Clostridium kluyveri DSM 555

Gene: CKL_0018: Seryl-tRNA synthetase (EC 6.1.1.11)
 
Clostridium sp. SS2/1

Gene: CLOSS21_01395: Seryl-tRNA synthetase (EC 6.1.1.11)
*
Clostridium cellulolyticum H10

Site:
position = -286
score = 96.57
sequence = AAAAACAGCGATTAT...

Gene: Ccel_3183: Seryl-tRNA synthetase (EC 6.1.1.11)
*
Clostridium phytofermentans ISDg

Site:
position = -392
score = 97.46
sequence = TCACGGTGATGATAA...

Gene: null: Seryl-tRNA synthetase (EC 6.1.1.11)
*
Clostridium tetani E88

Site:
position = -255
score = 116.32
sequence = ATTGAAACCTATGAA...

Gene: CTC00081: Seryl-tRNA synthetase (EC 6.1.1.11)
 2
Clostridium acetobutylicum ATCC 824

Gene: CAC0017: Seryl-tRNA synthetase (EC 6.1.1.11)

Gene: CAC0021: Seryl-tRNA synthetase (EC 6.1.1.11)
*2
Clostridium botulinum A str. ATCC 3502

Site:
position = -285
score = 92.74
sequence = AAACAGTGTTGATAA...

Gene: CBO0510: Seryl-tRNA synthetase (EC 6.1.1.11)

Site:
position = -283
score = 131.06
sequence = TAAAACCTGTGAAGA...

Gene: CBO0016: Seryl-tRNA synthetase (EC 6.1.1.11)
*
Clostridium novyi NT

Site:
position = -274
score = 120.3
sequence = ATTTAAACCATTGAA...

Gene: NT01CX_0848: Seryl-tRNA synthetase (EC 6.1.1.11)
*
Clostridium perfringens ATCC 13124

Site:
position = -293
score = 115.66
sequence = ATAAACCGTTGATCA...

Gene: CPF_0014: Seryl-tRNA synthetase (EC 6.1.1.11)
*2
Clostridium difficile 630

Site:
position = -330
score = 132.39
sequence = AAAAAGCTGTGAAGG...

Gene: CD0014: Seryl-tRNA synthetase (EC 6.1.1.11)

Gene: CD2840: Seryl-tRNA synthetase (EC 6.1.1.11)
*
Clostridium beijerincki NCIMB 8052

Site:
position = -272
score = 104.62
sequence = AAACAGCGATGATAA...

Gene: Cbei_1431: Seryl-tRNA synthetase (EC 6.1.1.11)
*
Clostridium sp. OhILAs

Site:
position = -397
score = 129.24
sequence = TTAATGCGAAGAAGA...

Gene: Clos_0014: Seryl-tRNA synthetase (EC 6.1.1.11)
 
Clostridium sp. L2-50

Gene: CLOL250_00973: Seryl-tRNA synthetase (EC 6.1.1.11)
 
Clostridium scindens ATCC 35704

Gene: CLOSCI_01921: Seryl-tRNA synthetase (EC 6.1.1.11)
 
Clostridium nexile DSM 1787

Gene: CLONEX_02367: Seryl-tRNA synthetase (EC 6.1.1.11)
 
Clostridium leptum DSM 753

Gene: CLOLEP_01279: Seryl-tRNA synthetase (EC 6.1.1.11)
*
Clostridium hiranonis DSM 13275

Site:
position = -343
score = 134.29
sequence = TGAAAAGGCAATGAA...

Gene: CLOHIR_02081: Seryl-tRNA synthetase (EC 6.1.1.11)
*
Clostridium butyricum 5521

Site:
position = -293
score = 80.54
sequence = AATAGGCGTTATTAT...

Gene: CBY_1480: Seryl-tRNA synthetase (EC 6.1.1.11)
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_04688: Seryl-tRNA synthetase (EC 6.1.1.11)
 
Clostridium bartlettii DSM 16795

Gene: CLOBAR_02784: Seryl-tRNA synthetase (EC 6.1.1.11)
Seryl-tRNA synthetase (EC 6.1.1.11)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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