Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog T-box(Pro) - Lactobacillaceae

Properties
Regulator type: RNA regulatory element
Name: T-box
RFAM: RF00230
Regulation mode:
Biological process: Amino acid metabolism
Effector: Pro-tRNA
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Oenococcus oeni PSU-1
Lactobacillus reuteri JCM 1112 3 1
Lactobacillus helveticus DPC 4571
Lactobacillus fermentum IFO 3956
Lactobacillus salivarius subsp. salivarius UCC118
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
Lactobacillus acidophilus NCFM
Lactobacillus johnsonii NCC 533
Lactobacillus plantarum WCFS1
Lactobacillus casei ATCC 334 2 1
Lactobacillus brevis ATCC 367
Lactobacillus sakei subsp. sakei 23K
Pediococcus pentosaceus ATCC 25745
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
Lactobacillus rhamnosus GG 2 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
proB
 
Oenococcus oeni PSU-1

Gene: OEOE_0947: Glutamate 5-kinase (EC 2.7.2.11)
*
Lactobacillus reuteri JCM 1112

Site:
position = -207
score = 18.36
sequence = ATTTTAATTGTAGAT...

Gene: LAR_0335: Glutamate 5-kinase (EC 2.7.2.11)
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus fermentum IFO 3956

Gene: LAF_1357: Glutamate 5-kinase (EC 2.7.2.11)
 
Lactobacillus salivarius subsp. salivarius UCC118

Gene: LSL_1612: Glutamate 5-kinase (EC 2.7.2.11)
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1

Gene: lp_0016: Glutamate 5-kinase (EC 2.7.2.11)
*
Lactobacillus casei ATCC 334

Site:
position = -240
score = 40.19
sequence = TACAATTCACTTCAT...

Gene: LSEI_2358: Glutamate 5-kinase (EC 2.7.2.11)
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_0294: Glutamate 5-kinase (EC 2.7.2.11)
*
Lactobacillus rhamnosus GG

Site:
position = -219
score = 38.57
sequence = CACTTCATCAAGTCA...

Gene: LGG_02366: Glutamate 5-kinase (EC 2.7.2.11)
Glutamate 5-kinase (EC 2.7.2.11)
proA
 
Oenococcus oeni PSU-1

Gene: OEOE_0948: Gamma-glutamyl phosphate reductase (EC 1.2.1.41)
 
Lactobacillus reuteri JCM 1112

Gene: LAR_0334: Gamma-glutamyl phosphate reductase (EC 1.2.1.41)
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus fermentum IFO 3956

Gene: LAF_1356: Gamma-glutamyl phosphate reductase (EC 1.2.1.41)
 
Lactobacillus salivarius subsp. salivarius UCC118

Gene: LSL_1611: Gamma-glutamyl phosphate reductase (EC 1.2.1.41)
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1

Gene: lp_0017: Gamma-glutamyl phosphate reductase (EC 1.2.1.41)
 
Lactobacillus casei ATCC 334

Gene: LSEI_2357: Gamma-glutamyl phosphate reductase (EC 1.2.1.41)
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_0295: Gamma-glutamyl phosphate reductase (EC 1.2.1.41)
 
Lactobacillus rhamnosus GG

Gene: LGG_02365: Gamma-glutamyl phosphate reductase (EC 1.2.1.41)
Gamma-glutamyl phosphate reductase (EC 1.2.1.41)
proI
 
Oenococcus oeni PSU-1

Gene: OEOE_0946: Pyrroline-5-carboxylate reductase (EC 1.5.1.2)
 
Lactobacillus reuteri JCM 1112

Gene: LAR_0333: Pyrroline-5-carboxylate reductase (EC 1.5.1.2)
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus fermentum IFO 3956

Gene: LAF_1394: Pyrroline-5-carboxylate reductase (EC 1.5.1.2)
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1
 
Lactobacillus casei ATCC 334
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Lactobacillus rhamnosus GG
Pyrroline-5-carboxylate reductase (EC 1.5.1.2)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD