Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog T-box(Phe) - Chloroflexia

Properties
Regulator type: RNA regulatory element
Name: T-box
RFAM: RF00230
Regulation mode:
Biological process: Amino acid metabolism
Effector: Phe-tRNA
Phylum: Chloroflexi
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Chloroflexus aggregans DSM 9485
Chloroflexus sp. Y-400-fl
Roseiflexus castenholzii DSM 13941 3 1
Roseiflexus sp. RS-1 3 1
Herpetosiphon aurantiacus ATCC 23779
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
pheS
 
Chloroflexus aggregans DSM 9485

Gene: Cagg_3159: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)
 
Chloroflexus sp. Y-400-fl
*
Roseiflexus castenholzii DSM 13941

Site:
position = -297
score = 62.49
sequence = CGCAGGCTATGACGA...

Gene: Rcas_1438: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)
*
Roseiflexus sp. RS-1

Site:
position = -296
score = 63.85
sequence = ACAGGGCTGTGACGA...

Gene: RoseRS_1036: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)
 
Herpetosiphon aurantiacus ATCC 23779

Gene: Haur_3836: Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)
Phenylalanyl-tRNA synthetase alpha chain (EC 6.1.1.20)
PF02366
 
Chloroflexus aggregans DSM 9485
 
Chloroflexus sp. Y-400-fl
 
Roseiflexus castenholzii DSM 13941

Gene: Rcas_1439: hypothetical protein
 
Roseiflexus sp. RS-1

Gene: RoseRS_1037: hypothetical protein
 
Herpetosiphon aurantiacus ATCC 23779

Gene: Haur_3837: hypothetical protein
hypothetical protein
pheT
 
Chloroflexus aggregans DSM 9485

Gene: Cagg_2462: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)
 
Chloroflexus sp. Y-400-fl

Gene: Chy400_0956: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)
 
Roseiflexus castenholzii DSM 13941

Gene: Rcas_1440: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)
 
Roseiflexus sp. RS-1

Gene: RoseRS_1038: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)
 
Herpetosiphon aurantiacus ATCC 23779

Gene: Haur_4633: Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)
Phenylalanyl-tRNA synthetase beta chain (EC 6.1.1.20)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD