Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog T-box(Met) - Clostridiaceae

Properties
Regulator type: RNA regulatory element
Name: T-box
RFAM: RF00230
Regulation mode:
Biological process: Amino acid metabolism
Effector: Met-tRNA
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Clostridium kluyveri DSM 555 1 1
Clostridium sp. SS2/1
Clostridium cellulolyticum H10 1 1
Clostridium phytofermentans ISDg 1 1
Clostridium tetani E88 1 1
Clostridium acetobutylicum ATCC 824 1 1
Clostridium botulinum A str. ATCC 3502 1 1
Clostridium novyi NT 1 1
Clostridium perfringens ATCC 13124 2 1
Clostridium difficile 630 1 1
Clostridium beijerincki NCIMB 8052 1 1
Clostridium sp. OhILAs 5 4
Clostridium sp. L2-50
Clostridium scindens ATCC 35704 1 1
Clostridium nexile DSM 1787 1 1
Clostridium leptum DSM 753
Clostridium hiranonis DSM 13275 1 1
Clostridium butyricum 5521 1 1
Clostridium bolteae ATCC BAA-613
Clostridium bartlettii DSM 16795 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
metS
*
Clostridium kluyveri DSM 555

Site:
position = -316
score = 91.09
sequence = GTTAAATACTATGAA...

Gene: CKL_3766: Methionyl-tRNA synthetase (EC 6.1.1.10)
 
Clostridium sp. SS2/1

Gene: CLOSS21_02673: Methionyl-tRNA synthetase (EC 6.1.1.10)
*
Clostridium cellulolyticum H10

Site:
position = -306
score = 74.37
sequence = TACAGGCTGTGAAGA...

Gene: Ccel_1098: Methionyl-tRNA synthetase (EC 6.1.1.10)
*
Clostridium phytofermentans ISDg

Site:
position = -416
score = 87.05
sequence = AAAATGCTGAGAAAA...

Gene: null: Methionyl-tRNA synthetase (EC 6.1.1.10)
*
Clostridium tetani E88

Site:
position = -318
score = 86.42
sequence = AAAATGCAATGAAAG...

Gene: CTC00243: Methionyl-tRNA synthetase (EC 6.1.1.10)
*
Clostridium acetobutylicum ATCC 824

Site:
position = -308
score = 92.38
sequence = TTCAAAAGCATTGAT...

Gene: CAC2991: Methionyl-tRNA synthetase (EC 6.1.1.10)
*
Clostridium botulinum A str. ATCC 3502

Site:
position = -302
score = 93.81
sequence = TAAATGCTATGAAGG...

Gene: CBO0075: Methionyl-tRNA synthetase (EC 6.1.1.10)
*
Clostridium novyi NT

Site:
position = -330
score = 66.27
sequence = AGAAAATGCAGTGAA...

Gene: NT01CX_0697: Methionyl-tRNA synthetase (EC 6.1.1.10)
*
Clostridium perfringens ATCC 13124

Site:
position = -332
score = 85.66
sequence = AGAAAATGCAATGAA...

Gene: CPF_2847: Methionyl-tRNA synthetase (EC 6.1.1.10)
*
Clostridium difficile 630

Site:
position = -331
score = 104.83
sequence = ATTACAAGCTATGAA...

Gene: CD3540: Methionyl-tRNA synthetase (EC 6.1.1.10)
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_0055: Methionyl-tRNA synthetase (EC 6.1.1.10)
*
Clostridium sp. OhILAs

Site:
position = -306
score = 111.04
sequence = TCTAAAAGCAGTGAT...

Gene: Clos_2662: Methionyl-tRNA synthetase (EC 6.1.1.10)
 
Clostridium sp. L2-50

Gene: CLOL250_01279: Methionyl-tRNA synthetase (EC 6.1.1.10)
*
Clostridium scindens ATCC 35704

Site:
position = -366
score = 50.67
sequence = CAAACGCAGTGACGG...

Gene: CLOSCI_03024: Methionyl-tRNA synthetase (EC 6.1.1.10)
*
Clostridium nexile DSM 1787

Site:
position = -267
score = 75.53
sequence = AGGAAACGCAATGAT...

Gene: CLONEX_03592: Methionyl-tRNA synthetase (EC 6.1.1.10)
 
Clostridium leptum DSM 753

Gene: CLOLEP_02543: Methionyl-tRNA synthetase (EC 6.1.1.10)
*
Clostridium hiranonis DSM 13275

Site:
position = -288
score = 111.11
sequence = TAAAAGCGATGAAGA...

Gene: CLOHIR_01636: Methionyl-tRNA synthetase (EC 6.1.1.10)
*
Clostridium butyricum 5521

Site:
position = -440
score = 95.98
sequence = TTTAAATGCATTGAA...

Gene: CBY_2255: Methionyl-tRNA synthetase (EC 6.1.1.10)
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_04510: Methionyl-tRNA synthetase (EC 6.1.1.10)
*
Clostridium bartlettii DSM 16795

Site:
position = -267
score = 132.73
sequence = TAAAAGCAATGAAGA...

Gene: CLOBAR_02505: Methionyl-tRNA synthetase (EC 6.1.1.10)
Methionyl-tRNA synthetase (EC 6.1.1.10)
metS2
 
Clostridium kluyveri DSM 555
 
Clostridium sp. SS2/1
 
Clostridium cellulolyticum H10
 
Clostridium phytofermentans ISDg
 
Clostridium tetani E88
 
Clostridium acetobutylicum ATCC 824
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium novyi NT
 
Clostridium perfringens ATCC 13124

Gene: CPF_2846: Methionyl-tRNA synthetase, clostridial paralog
 
Clostridium difficile 630
 
Clostridium beijerincki NCIMB 8052
*
Clostridium sp. OhILAs

Site:
position = -303
score = 117.9
sequence = TAAATGCGAAGAAAA...

Gene: Clos_1003: Methionyl-tRNA synthetase, clostridial paralog
 
Clostridium sp. L2-50
 
Clostridium scindens ATCC 35704
 
Clostridium nexile DSM 1787
 
Clostridium leptum DSM 753
 
Clostridium hiranonis DSM 13275
 
Clostridium butyricum 5521

Gene: CBY_2254: Methionyl-tRNA synthetase, clostridial paralog
 
Clostridium bolteae ATCC BAA-613
 
Clostridium bartlettii DSM 16795
Methionyl-tRNA synthetase, clostridial paralog
 
CRON 2.
metS3
 
Clostridium kluyveri DSM 555
 
Clostridium sp. SS2/1
 
Clostridium cellulolyticum H10

Gene: Ccel_0205: Methionyl-tRNA synthetase (EC 6.1.1.10)
 
Clostridium phytofermentans ISDg
 
Clostridium tetani E88
 
Clostridium acetobutylicum ATCC 824
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium novyi NT
 
Clostridium perfringens ATCC 13124
 
Clostridium difficile 630
*
Clostridium beijerincki NCIMB 8052

Site:
position = -285
score = 32.04
sequence = ATTATAAGTGATGCT...

Gene: Cbei_3185: Methionyl-tRNA synthetase (EC 6.1.1.10)
*
Clostridium sp. OhILAs

Site:
position = -360
score = 99.55
sequence = TAAAGGCTGTGAAGA...

Gene: Clos_1001: Methionyl-tRNA synthetase (EC 6.1.1.10)
 
Clostridium sp. L2-50
 
Clostridium scindens ATCC 35704
 
Clostridium nexile DSM 1787
 
Clostridium leptum DSM 753
 
Clostridium hiranonis DSM 13275
 
Clostridium butyricum 5521
 
Clostridium bolteae ATCC BAA-613
 
Clostridium bartlettii DSM 16795
Methionyl-tRNA synthetase (EC 6.1.1.10)
 
CRON 3.
metN
 
Clostridium kluyveri DSM 555
 
Clostridium sp. SS2/1
 
Clostridium cellulolyticum H10
 
Clostridium phytofermentans ISDg

Gene: null: Methionine ABC transporter ATP-binding protein
 
Clostridium tetani E88
 
Clostridium acetobutylicum ATCC 824
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium novyi NT
 
Clostridium perfringens ATCC 13124
 
Clostridium difficile 630
 
Clostridium beijerincki NCIMB 8052
*
Clostridium sp. OhILAs

Site:
position = -335
score = 95.85
sequence = CAAAGACGTTGAAGA...

Gene: Clos_0125: Methionine ABC transporter ATP-binding protein
 
Clostridium sp. L2-50
 
Clostridium scindens ATCC 35704
 
Clostridium nexile DSM 1787
 
Clostridium leptum DSM 753
 
Clostridium hiranonis DSM 13275
 
Clostridium butyricum 5521
 
Clostridium bolteae ATCC BAA-613
 
Clostridium bartlettii DSM 16795
Methionine ABC transporter ATP-binding protein
metP
 
Clostridium kluyveri DSM 555
 
Clostridium sp. SS2/1
 
Clostridium cellulolyticum H10
 
Clostridium phytofermentans ISDg

Gene: null: Methionine ABC transporter permease protein
 
Clostridium tetani E88
 
Clostridium acetobutylicum ATCC 824
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium novyi NT
 
Clostridium perfringens ATCC 13124
 
Clostridium difficile 630
 
Clostridium beijerincki NCIMB 8052
 
Clostridium sp. OhILAs

Gene: Clos_0126: Methionine ABC transporter permease protein
 
Clostridium sp. L2-50
 
Clostridium scindens ATCC 35704
 
Clostridium nexile DSM 1787
 
Clostridium leptum DSM 753
 
Clostridium hiranonis DSM 13275
 
Clostridium butyricum 5521
 
Clostridium bolteae ATCC BAA-613
 
Clostridium bartlettii DSM 16795
Methionine ABC transporter permease protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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