Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog T-box(Met) - Lactobacillaceae

Properties
Regulator type: RNA regulatory element
Name: T-box
RFAM: RF00230
Regulation mode:
Biological process: Amino acid metabolism
Effector: Met-tRNA
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Oenococcus oeni PSU-1 9 2
Lactobacillus reuteri JCM 1112 12 6
Lactobacillus helveticus DPC 4571 6 3
Lactobacillus fermentum IFO 3956 13 6
Lactobacillus salivarius subsp. salivarius UCC118 5 1
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 6 3
Lactobacillus acidophilus NCFM 7 4
Lactobacillus johnsonii NCC 533 5 2
Lactobacillus plantarum WCFS1 16 7
Lactobacillus casei ATCC 334 8 4
Lactobacillus brevis ATCC 367 5 3
Lactobacillus sakei subsp. sakei 23K 3 1
Pediococcus pentosaceus ATCC 25745 4 2
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 20 6
Lactobacillus rhamnosus GG 7 4
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
metQ2
 
Oenococcus oeni PSU-1
*
Lactobacillus reuteri JCM 1112

Site:
position = -304
score = 71.35
sequence = TAAAATTACGTTAGA...

Gene: LAR_1132: Methionine ABC transporter substrate-binding protein
 
Lactobacillus helveticus DPC 4571
*
Lactobacillus fermentum IFO 3956

Site:
position = -284
score = 72.81
sequence = GAAAAGTTAGAAAGA...

Gene: LAF_0793: Methionine ABC transporter substrate-binding protein
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1
 
Lactobacillus casei ATCC 334
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Lactobacillus rhamnosus GG
Methionine ABC transporter substrate-binding protein
msrA
 
Oenococcus oeni PSU-1
 
Lactobacillus reuteri JCM 1112

Gene: LAR_1131: Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11)
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus fermentum IFO 3956

Gene: LAF_0794: Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11)
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1
 
Lactobacillus casei ATCC 334
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Lactobacillus rhamnosus GG
Peptide methionine sulfoxide reductase MsrA (EC 1.8.4.11)
 
CRON 2.
metQ
*2
Oenococcus oeni PSU-1

Gene: OEOE_1054: Methionine ABC transporter substrate-binding protein

Site:
position = -233
score = 91.25
sequence = CAAACGAATTGATCC...

Gene: OEOE_1717: Methionine ABC transporter substrate-binding protein
*2
Lactobacillus reuteri JCM 1112

Site:
position = -335
score = 97.97
sequence = TTAAAACATATCGAA...

Gene: LAR_0184: Methionine ABC transporter substrate-binding protein

Gene: LAR_1485: Methionine ABC transporter substrate-binding protein
*
Lactobacillus helveticus DPC 4571

Site:
position = -287
score = 90.49
sequence = CAAACATCTTGAAGA...

Gene: lhv_0960: Methionine ABC transporter substrate-binding protein
*2
Lactobacillus fermentum IFO 3956

Site:
position = -317
score = 90.31
sequence = AAAACATATCGAAAA...

Gene: LAF_0053: Methionine ABC transporter substrate-binding protein

Gene: LAF_0177: Methionine ABC transporter substrate-binding protein
 2
Lactobacillus salivarius subsp. salivarius UCC118

Gene: LSL_0141: Methionine ABC transporter substrate-binding protein

Gene: LSL_0130: Methionine ABC transporter substrate-binding protein
*2
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Site:
position = -330
score = 90.29
sequence = AAGTTATCTCGAAAA...

Gene: LBUL_0723: Methionine ABC transporter substrate-binding protein

Gene: LBUL_0087: Methionine ABC transporter substrate-binding protein
*2
Lactobacillus acidophilus NCFM

Site:
position = -287
score = 91.63
sequence = TAAACATCTTGAAGA...

Gene: LBA0904: Methionine ABC transporter substrate-binding protein

Site:
position = -270
score = 91.97
sequence = AAAAAATCTTGATGA...

Gene: LBA1395: Methionine ABC transporter substrate-binding protein
*
Lactobacillus johnsonii NCC 533

Site:
position = -295
score = 71.38
sequence = AACTTAAACATTTTG...

Gene: LJ1408: Methionine ABC transporter substrate-binding protein
 2
Lactobacillus plantarum WCFS1

Gene: lp_2350: Methionine ABC transporter substrate-binding protein

Gene: lp_1746: Methionine ABC transporter substrate-binding protein
*2
Lactobacillus casei ATCC 334

Site:
position = -351
score = 74.32
sequence = ACAACACTTTGAGAA...

Gene: LSEI_0411: Methionine ABC transporter substrate-binding protein

Site:
position = -312
score = 76.28
sequence = GAAACGAATGACGTG...

Gene: LSEI_1177: Methionine ABC transporter substrate-binding protein
*
Lactobacillus brevis ATCC 367

Site:
position = -346
score = 82.41
sequence = TGAAAACAATGTGAT...

Gene: LVIS_1957: Methionine ABC transporter substrate-binding protein
 
Lactobacillus sakei subsp. sakei 23K

Gene: LSA1114: Methionine ABC transporter substrate-binding protein
 
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_1309: Methionine ABC transporter substrate-binding protein
*2
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Site:
position = -388
score = 76.42
sequence = CGAAAACAAATTGAA...

Gene: LEUM_0431: Methionine ABC transporter substrate-binding protein

Gene: LEUM_0430: Methionine ABC transporter substrate-binding protein
*3
Lactobacillus rhamnosus GG

Site:
position = -313
score = 81.96
sequence = GAAACGAATGATATG...

Gene: LGG_01196: Methionine ABC transporter substrate-binding protein

Site:
position = -342
score = 73.29
sequence = AACGGACTGAGTGAG...

Gene: LGG_01195: Methionine ABC transporter substrate-binding protein

Site:
position = -313
score = 62.49
sequence = TCAACACTTCGAGAA...

Gene: LGG_00500: Methionine ABC transporter substrate-binding protein
Methionine ABC transporter substrate-binding protein
hmrB
 2
Oenococcus oeni PSU-1

Gene: OEOE_1719: N-acyl-L-amino acid amidohydrolase

Gene: OEOE_1063: N-acyl-L-amino acid amidohydrolase
 
Lactobacillus reuteri JCM 1112

Gene: LAR_0181: N-acyl-L-amino acid amidohydrolase
 
Lactobacillus helveticus DPC 4571
 2
Lactobacillus fermentum IFO 3956

Gene: LAF_0056: N-acyl-L-amino acid amidohydrolase

Gene: LAF_0788: N-acyl-L-amino acid amidohydrolase
 
Lactobacillus salivarius subsp. salivarius UCC118

Gene: LSL_0133: N-acyl-L-amino acid amidohydrolase
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1
 
Lactobacillus casei ATCC 334
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_0429: N-acyl-L-amino acid amidohydrolase
 
Lactobacillus rhamnosus GG
N-acyl-L-amino acid amidohydrolase
metN
 2
Oenococcus oeni PSU-1

Gene: OEOE_1056: Methionine ABC transporter ATP-binding protein

Gene: OEOE_1720: Methionine ABC transporter ATP-binding protein
 
Lactobacillus reuteri JCM 1112

Gene: LAR_0183: Methionine ABC transporter ATP-binding protein
 
Lactobacillus helveticus DPC 4571

Gene: lhv_0961: Methionine ABC transporter ATP-binding protein
 
Lactobacillus fermentum IFO 3956

Gene: LAF_0054: Methionine ABC transporter ATP-binding protein
 
Lactobacillus salivarius subsp. salivarius UCC118

Gene: LSL_0131: Methionine ABC transporter ATP-binding protein
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Gene: LBUL_0724: Methionine ABC transporter ATP-binding protein
 
Lactobacillus acidophilus NCFM

Gene: LBA0905: Methionine ABC transporter ATP-binding protein
 
Lactobacillus johnsonii NCC 533

Gene: LJ1407: Methionine ABC transporter ATP-binding protein
*2
Lactobacillus plantarum WCFS1

Site:
position = -303
score = 75.41
sequence = AGTTATCATTTTGAA...

Gene: lp_2352: Methionine ABC transporter ATP-binding protein

Site:
position = -318
score = 72.73
sequence = AATAAATACGTCTAA...

Gene: lp_1744: Methionine ABC transporter ATP-binding protein
 
Lactobacillus casei ATCC 334

Gene: LSEI_1178: Methionine ABC transporter ATP-binding protein
 
Lactobacillus brevis ATCC 367

Gene: LVIS_1956: Methionine ABC transporter ATP-binding protein
*
Lactobacillus sakei subsp. sakei 23K

Site:
position = -309
score = 80.31
sequence = AATACAAGCGATGAA...

Gene: LSA1116: Methionine ABC transporter ATP-binding protein
*
Pediococcus pentosaceus ATCC 25745

Site:
position = -300
score = 96.23
sequence = AACAAAGTATTAGAG...

Gene: PEPE_1311: Methionine ABC transporter ATP-binding protein
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_0428: Methionine ABC transporter ATP-binding protein
 
Lactobacillus rhamnosus GG

Gene: LGG_01197: Methionine ABC transporter ATP-binding protein
Methionine ABC transporter ATP-binding protein
metP
 2
Oenococcus oeni PSU-1

Gene: OEOE_1055: Methionine ABC transporter permease protein

Gene: OEOE_1721: Methionine ABC transporter permease protein
 
Lactobacillus reuteri JCM 1112

Gene: LAR_0182: Methionine ABC transporter permease protein
 
Lactobacillus helveticus DPC 4571

Gene: lhv_0962: Methionine ABC transporter permease protein
 
Lactobacillus fermentum IFO 3956

Gene: LAF_0055: Methionine ABC transporter permease protein
 2
Lactobacillus salivarius subsp. salivarius UCC118

Gene: LSL_0140: Methionine ABC transporter permease protein

Gene: LSL_0132: Methionine ABC transporter permease protein
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Gene: LBUL_0725: Methionine ABC transporter permease protein
 
Lactobacillus acidophilus NCFM

Gene: LBA0906: Methionine ABC transporter permease protein
 
Lactobacillus johnsonii NCC 533

Gene: LJ1406: Methionine ABC transporter permease protein
 2
Lactobacillus plantarum WCFS1

Gene: lp_2351: Methionine ABC transporter permease protein

Gene: lp_1745: Methionine ABC transporter permease protein
 
Lactobacillus casei ATCC 334

Gene: LSEI_1179: Methionine ABC transporter permease protein
 
Lactobacillus brevis ATCC 367

Gene: LVIS_1955: Methionine ABC transporter permease protein
 
Lactobacillus sakei subsp. sakei 23K

Gene: LSA1115: Methionine ABC transporter permease protein
 
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_1310: Methionine ABC transporter permease protein
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_0427: Methionine ABC transporter permease protein
 
Lactobacillus rhamnosus GG

Gene: LGG_01198: Methionine ABC transporter permease protein
Methionine ABC transporter permease protein
metE2
 
Oenococcus oeni PSU-1

Gene: OEOE_1718: Methionine synthase II, vitamin-B12 independent (EC 2.1.1.14)
*2
Lactobacillus reuteri JCM 1112

Site:
position = -312
score = 78.65
sequence = TAACCGCAATGAAAA...

Gene: LAR_1028: Methionine synthase II, vitamin-B12 independent (EC 2.1.1.14)

Site:
position = -345
score = 87.12
sequence = AAACAGCTTAGAAAA...

Gene: LAR_1752: Methionine synthase II, vitamin-B12 independent (EC 2.1.1.14)
 
Lactobacillus helveticus DPC 4571
*2
Lactobacillus fermentum IFO 3956

Site:
position = -316
score = 72.06
sequence = AGAAACAGCTGAGAA...

Gene: LAF_1601: Methionine synthase II, vitamin-B12 independent (EC 2.1.1.14)

Site:
position = -328
score = 81.71
sequence = ATAAGTTGCTGAGAA...

Gene: LAF_0302: Methionine synthase II, vitamin-B12 independent (EC 2.1.1.14)
*
Lactobacillus salivarius subsp. salivarius UCC118

Site:
position = -319
score = 73.85
sequence = AAATAGCTAAGAAAA...

Gene: LSL_0129: Methionine synthase II, vitamin-B12 independent (EC 2.1.1.14)
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Gene: LBUL_0096: Methionine synthase II, vitamin-B12 independent (EC 2.1.1.14)
*
Lactobacillus acidophilus NCFM

Site:
position = -308
score = 75.51
sequence = AAGCGACGAAGAAAA...

Gene: LBA1080: Methionine synthase II, vitamin-B12 independent (EC 2.1.1.14)
*
Lactobacillus johnsonii NCC 533

Site:
position = -459
score = 93.32
sequence = TTAAAGCTTAGAAAA...

Gene: LJ0632: Methionine synthase II, vitamin-B12 independent (EC 2.1.1.14)
*
Lactobacillus plantarum WCFS1

Site:
position = -335
score = 77.68
sequence = AAAGAACGATTAAAA...

Gene: lp_3283: Methionine synthase II, vitamin-B12 independent (EC 2.1.1.14)
*
Lactobacillus casei ATCC 334

Site:
position = -486
score = 66.84
sequence = CAGATTGCTTTGCGG...

Gene: LSEI_0764: Methionine synthase II, vitamin-B12 independent (EC 2.1.1.14)
*
Lactobacillus brevis ATCC 367

Site:
position = -312
score = 56.47
sequence = ATAAATAAAGCTCGG...

Gene: LVIS_0258: Methionine synthase II, vitamin-B12 independent (EC 2.1.1.14)
 
Lactobacillus sakei subsp. sakei 23K
*
Pediococcus pentosaceus ATCC 25745

Site:
position = -337
score = 80.23
sequence = AATGAAAGCAATGAG...

Gene: PEPE_0496: Methionine synthase II, vitamin-B12 independent (EC 2.1.1.14)
*2
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Site:
position = -378
score = 71.51
sequence = TATTTTAACAAAGAA...

Gene: LEUM_1801: Methionine synthase II, vitamin-B12 independent (EC 2.1.1.14)

Gene: LEUM_1803: Methionine synthase II, vitamin-B12 independent (EC 2.1.1.14)
 
Lactobacillus rhamnosus GG

Gene: LGG_00749: Methionine synthase II, vitamin-B12 independent (EC 2.1.1.14)
Methionine synthase II, vitamin-B12 independent (EC 2.1.1.14)
metA
 
Oenococcus oeni PSU-1

Gene: OEOE_0767: Homoserine O-succinyltransferase (EC 2.3.1.46)
 
Lactobacillus reuteri JCM 1112

Gene: LAR_1676: Homoserine O-succinyltransferase (EC 2.3.1.46)
 
Lactobacillus helveticus DPC 4571

Gene: lhv_1326: Homoserine O-succinyltransferase (EC 2.3.1.46)
*2
Lactobacillus fermentum IFO 3956

Site:
position = -274
score = 80.52
sequence = ATAAATTTCGTTGAT...

Gene: LAF_0826: Homoserine O-succinyltransferase (EC 2.3.1.46)

Gene: LAF_0345: Homoserine O-succinyltransferase (EC 2.3.1.46)
 
Lactobacillus salivarius subsp. salivarius UCC118

Gene: LSL_1717: Homoserine O-succinyltransferase (EC 2.3.1.46)
 2
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Gene: LBUL_1353: Homoserine O-succinyltransferase (EC 2.3.1.46)

Gene: LBUL_0089: Homoserine O-succinyltransferase (EC 2.3.1.46)
 
Lactobacillus acidophilus NCFM

Gene: LBA1237: Homoserine O-succinyltransferase (EC 2.3.1.46)
 
Lactobacillus johnsonii NCC 533
*
Lactobacillus plantarum WCFS1

Site:
position = -315
score = 70.56
sequence = GATTAAGACGTTGAA...

Gene: lp_2537: Homoserine O-succinyltransferase (EC 2.3.1.46)
 
Lactobacillus casei ATCC 334

Gene: LSEI_0479: Homoserine O-succinyltransferase (EC 2.3.1.46)
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Site:
position = -354
score = 88.87
sequence = AATATAAACGTTGAA...

Gene: LEUM_1806: Homoserine O-succinyltransferase (EC 2.3.1.46)
 
Lactobacillus rhamnosus GG

Gene: LGG_00567: Homoserine O-succinyltransferase (EC 2.3.1.46)
Homoserine O-succinyltransferase (EC 2.3.1.46)
metI
 
Oenococcus oeni PSU-1

Gene: OEOE_0766: Cystathionine gamma-synthase (EC 2.5.1.48)
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus fermentum IFO 3956

Gene: LAF_0815: Cystathionine gamma-synthase (EC 2.5.1.48)
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
*
Lactobacillus plantarum WCFS1

Site:
position = -319
score = 68.78
sequence = AAATAACATGTTGAT...

Gene: lp_2634: Cystathionine gamma-synthase (EC 2.5.1.48)
 
Lactobacillus casei ATCC 334
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_1805: Cystathionine gamma-synthase (EC 2.5.1.48)
 
Lactobacillus rhamnosus GG
Cystathionine gamma-synthase (EC 2.5.1.48)
metC
 
Oenococcus oeni PSU-1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1
 
Lactobacillus casei ATCC 334
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_1804: Cystathionine beta-lyase
 
Lactobacillus rhamnosus GG
Cystathionine beta-lyase
yebR
*
Oenococcus oeni PSU-1

Site:
position = -235
score = 83.03
sequence = TTCAAACGAATTGAT...

Gene: OEOE_1057: GAF domain-containing protein
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1
 
Lactobacillus casei ATCC 334
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Lactobacillus rhamnosus GG
GAF domain-containing protein
LEUM_1800
 
Oenococcus oeni PSU-1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1
 
Lactobacillus casei ATCC 334
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_1800: hypothetical protein
 
Lactobacillus rhamnosus GG
hypothetical protein
metY
 
Oenococcus oeni PSU-1

Gene: OEOE_0239: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48)
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1

Gene: lp_2536: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48)
 
Lactobacillus casei ATCC 334
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_1799: O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48)
 
Lactobacillus rhamnosus GG
O-acetylhomoserine sulfhydrylase (EC 2.5.1.49) / O-succinylhomoserine sulfhydrylase (EC 2.5.1.48)
hom
 
Oenococcus oeni PSU-1

Gene: OEOE_1546: Homoserine dehydrogenase (EC 1.1.1.3)
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571
 2
Lactobacillus fermentum IFO 3956

Gene: LAF_1145: Homoserine dehydrogenase (EC 1.1.1.3)

Gene: LAF_0825: Homoserine dehydrogenase (EC 1.1.1.3)
 
Lactobacillus salivarius subsp. salivarius UCC118

Gene: LSL_1519: Homoserine dehydrogenase (EC 1.1.1.3)
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Gene: LBUL_1259: Homoserine dehydrogenase (EC 1.1.1.3)
 
Lactobacillus acidophilus NCFM

Gene: LBA1212: Homoserine dehydrogenase (EC 1.1.1.3)
 
Lactobacillus johnsonii NCC 533
 2
Lactobacillus plantarum WCFS1

Gene: lp_0571: Homoserine dehydrogenase (EC 1.1.1.3)

Gene: lp_2535: Homoserine dehydrogenase (EC 1.1.1.3)
 
Lactobacillus casei ATCC 334

Gene: LSEI_2151: Homoserine dehydrogenase (EC 1.1.1.3)
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_0786: Homoserine dehydrogenase (EC 1.1.1.3)
 
Lactobacillus rhamnosus GG

Gene: LGG_02155: Homoserine dehydrogenase (EC 1.1.1.3)
Homoserine dehydrogenase (EC 1.1.1.3)
rhc
 
Oenococcus oeni PSU-1

Gene: OEOE_1562: S-ribosylhomocysteine lyase (EC 4.4.1.21) / Autoinducer-2 production protein LuxS
*
Lactobacillus reuteri JCM 1112

Site:
position = -329
score = 82.17
sequence = AGATATTGCTTAGAA...

Gene: LAR_1486: S-ribosylhomocysteine lyase (EC 4.4.1.21) / Autoinducer-2 production protein LuxS
*
Lactobacillus helveticus DPC 4571

Site:
position = -373
score = 67.22
sequence = GAAAAGCTCTGAAGA...

Gene: lhv_1913: S-ribosylhomocysteine lyase (EC 4.4.1.21) / Autoinducer-2 production protein LuxS
 
Lactobacillus fermentum IFO 3956

Gene: LAF_1600: S-ribosylhomocysteine lyase (EC 4.4.1.21) / Autoinducer-2 production protein LuxS
 
Lactobacillus salivarius subsp. salivarius UCC118

Gene: LSL_1173: S-ribosylhomocysteine lyase (EC 4.4.1.21) / Autoinducer-2 production protein LuxS
*2
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Site:
position = -375
score = 67.24
sequence = GGGAAAAGCTCTGAA...

Gene: LBUL_1233: S-ribosylhomocysteine lyase (EC 4.4.1.21) / Autoinducer-2 production protein LuxS

Gene: LBUL_0088: S-ribosylhomocysteine lyase (EC 4.4.1.21) / Autoinducer-2 production protein LuxS
 
Lactobacillus acidophilus NCFM

Gene: LBA1081: S-ribosylhomocysteine lyase (EC 4.4.1.21) / Autoinducer-2 production protein LuxS
 
Lactobacillus johnsonii NCC 533

Gene: LJ0631: S-ribosylhomocysteine lyase (EC 4.4.1.21) / Autoinducer-2 production protein LuxS
 
Lactobacillus plantarum WCFS1

Gene: lp_0774: S-ribosylhomocysteine lyase (EC 4.4.1.21) / Autoinducer-2 production protein LuxS
 
Lactobacillus casei ATCC 334

Gene: LSEI_0765: S-ribosylhomocysteine lyase (EC 4.4.1.21) / Autoinducer-2 production protein LuxS
 
Lactobacillus brevis ATCC 367

Gene: LVIS_0340: S-ribosylhomocysteine lyase (EC 4.4.1.21) / Autoinducer-2 production protein LuxS
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_1638: S-ribosylhomocysteine lyase (EC 4.4.1.21) / Autoinducer-2 production protein LuxS
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_1802: S-ribosylhomocysteine lyase (EC 4.4.1.21) / Autoinducer-2 production protein LuxS
 
Lactobacillus rhamnosus GG

Gene: LGG_00750: S-ribosylhomocysteine lyase (EC 4.4.1.21) / Autoinducer-2 production protein LuxS
S-ribosylhomocysteine lyase (EC 4.4.1.21) / Autoinducer-2 production protein LuxS
metE
 
Oenococcus oeni PSU-1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571

Gene: lhv_1914: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Gene: LBUL_1232: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
*2
Lactobacillus plantarum WCFS1

Site:
position = -303
score = 94.33
sequence = TGTAAACGTCCTGAA...

Gene: lp_1375: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)

Gene: lp_2718: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
*
Lactobacillus casei ATCC 334

Site:
position = -423
score = 79.17
sequence = TTGAAATGCGGAAAG...

Gene: LSEI_0625: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_1794: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
*
Lactobacillus rhamnosus GG

Site:
position = -457
score = 81.14
sequence = TTGAAATGCGGAAAG...

Gene: LGG_00597: 5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase (EC 2.1.1.14)
metF
 
Oenococcus oeni PSU-1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571

Gene: lhv_1915: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Gene: LBUL_1231: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1

Gene: lp_1374: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
 
Lactobacillus casei ATCC 334

Gene: LSEI_0624: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Site:
position = -500
score = 84.19
sequence = GTTTTATACGAAGAA...

Gene: LEUM_1795: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
 
Lactobacillus rhamnosus GG

Gene: LGG_00596: 5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
5,10-methylenetetrahydrofolate reductase (EC 1.5.1.20)
mdh
 
Oenococcus oeni PSU-1
 
Lactobacillus reuteri JCM 1112

Gene: LAR_1029: Predicted metal-dependent hydrolase
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1
 
Lactobacillus casei ATCC 334
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
*2
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Site:
position = -320
score = 92.37
sequence = CAAAAACTTTGAAAA...

Gene: LEUM_0115: Predicted metal-dependent hydrolase

Gene: LEUM_1523: Predicted metal-dependent hydrolase
 
Lactobacillus rhamnosus GG
Predicted metal-dependent hydrolase
LEUM_0116
 
Oenococcus oeni PSU-1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1
 
Lactobacillus casei ATCC 334
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_0116: Amino acid transporter
 
Lactobacillus rhamnosus GG
Amino acid transporter
metB
 
Oenococcus oeni PSU-1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571
*
Lactobacillus fermentum IFO 3956

Site:
position = -280
score = 76.1
sequence = TGTTCACGTTGATGA...

Gene: LAF_0814: Cystathionine gamma-lyase (EC 4.4.1.1)
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1
 
Lactobacillus casei ATCC 334
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Lactobacillus rhamnosus GG
Cystathionine gamma-lyase (EC 4.4.1.1)
 
CRON 3.
hcp
 
Oenococcus oeni PSU-1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Gene: LBUL_1585: hypothetical protein
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533

Gene: LJ1702: hypothetical protein
 
Lactobacillus plantarum WCFS1
 
Lactobacillus casei ATCC 334
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Site:
position = -283
score = 75.05
sequence = ATTAAAATCGTTGAA...

Gene: LEUM_1975: hypothetical protein
 
Lactobacillus rhamnosus GG

Gene: LGG_00428: hypothetical protein
hypothetical protein
mtsA
 
Oenococcus oeni PSU-1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571

Gene: lhv_0999: Substrate-specific component MtsA of methionine-regulated ECF transporter
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Gene: LBUL_1584: Substrate-specific component MtsA of methionine-regulated ECF transporter
 
Lactobacillus acidophilus NCFM

Gene: LBA0922: Substrate-specific component MtsA of methionine-regulated ECF transporter
 
Lactobacillus johnsonii NCC 533

Gene: LJ1703: Substrate-specific component MtsA of methionine-regulated ECF transporter
*
Lactobacillus plantarum WCFS1

Site:
position = -315
score = 63.62
sequence = AGAAAAAGCTGTGAC...

Gene: lp_0150: Substrate-specific component MtsA of methionine-regulated ECF transporter
 
Lactobacillus casei ATCC 334
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_1974: Substrate-specific component MtsA of methionine-regulated ECF transporter
 
Lactobacillus rhamnosus GG

Gene: LGG_00429: Substrate-specific component MtsA of methionine-regulated ECF transporter
Substrate-specific component MtsA of methionine-regulated ECF transporter
mtsB
 
Oenococcus oeni PSU-1

Gene: OEOE_1540: Duplicated ATPase component MtsB of energizing module of methionine-regulated ECF transporter
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571

Gene: lhv_0998: Duplicated ATPase component MtsB of energizing module of methionine-regulated ECF transporter
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Gene: LBUL_1583: Duplicated ATPase component MtsB of energizing module of methionine-regulated ECF transporter
 
Lactobacillus acidophilus NCFM

Gene: LBA0921: Duplicated ATPase component MtsB of energizing module of methionine-regulated ECF transporter
 
Lactobacillus johnsonii NCC 533

Gene: LJ1704: Duplicated ATPase component MtsB of energizing module of methionine-regulated ECF transporter
 
Lactobacillus plantarum WCFS1

Gene: lp_0149: Duplicated ATPase component MtsB of energizing module of methionine-regulated ECF transporter
 
Lactobacillus casei ATCC 334
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_1973: Duplicated ATPase component MtsB of energizing module of methionine-regulated ECF transporter
 
Lactobacillus rhamnosus GG

Gene: LGG_00430: Duplicated ATPase component MtsB of energizing module of methionine-regulated ECF transporter
Duplicated ATPase component MtsB of energizing module of methionine-regulated ECF transporter
mtsC
 
Oenococcus oeni PSU-1

Gene: OEOE_1539: Transmembrane component MtsC of energizing module of methionine-regulated ECF transporter
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571

Gene: lhv_0997: Transmembrane component MtsC of energizing module of methionine-regulated ECF transporter
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Gene: LBUL_1582: Transmembrane component MtsC of energizing module of methionine-regulated ECF transporter
 
Lactobacillus acidophilus NCFM

Gene: LBA0920: Transmembrane component MtsC of energizing module of methionine-regulated ECF transporter
 
Lactobacillus johnsonii NCC 533

Gene: LJ1705: Transmembrane component MtsC of energizing module of methionine-regulated ECF transporter
 
Lactobacillus plantarum WCFS1

Gene: lp_0148: Transmembrane component MtsC of energizing module of methionine-regulated ECF transporter
 
Lactobacillus casei ATCC 334
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_1972: Transmembrane component MtsC of energizing module of methionine-regulated ECF transporter
 
Lactobacillus rhamnosus GG

Gene: LGG_00431: Transmembrane component MtsC of energizing module of methionine-regulated ECF transporter
Transmembrane component MtsC of energizing module of methionine-regulated ECF transporter
 
CRON 4.
mmuM
 
Oenococcus oeni PSU-1
*
Lactobacillus reuteri JCM 1112

Site:
position = -296
score = 85.71
sequence = AGAATTCGCTGAGAT...

Gene: LAR_0993: Homocysteine S-methyltransferase (EC 2.1.1.10)
*
Lactobacillus helveticus DPC 4571

Site:
position = -194
score = 76.14
sequence = TGAAAAATTTGAAAA...

Gene: lhv_1172: Homocysteine S-methyltransferase (EC 2.1.1.10)
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Gene: LBUL_0268: Homocysteine S-methyltransferase (EC 2.1.1.10)
 
Lactobacillus acidophilus NCFM

Gene: LBA1003: Homocysteine S-methyltransferase (EC 2.1.1.10)
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1
 
Lactobacillus casei ATCC 334
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Lactobacillus rhamnosus GG
Homocysteine S-methyltransferase (EC 2.1.1.10)
 
CRON 5.
oppA
 
Oenococcus oeni PSU-1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus salivarius subsp. salivarius UCC118
*
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Site:
position = -426
score = 56.98
sequence = AGCAAAGCTTAAGAA...

Gene: LBUL_0325: ABC-type oligopeptide transport system, periplasmic component
*
Lactobacillus acidophilus NCFM

Site:
position = -309
score = 76.92
sequence = ATTAAGCAATGACAA...

Gene: LBA1961: ABC-type oligopeptide transport system, periplasmic component
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1
 
Lactobacillus casei ATCC 334
*
Lactobacillus brevis ATCC 367

Site:
position = -280
score = 91.08
sequence = TGAACGCATGACTAG...

Gene: LVIS_2175: ABC-type oligopeptide transport system, periplasmic component
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Lactobacillus rhamnosus GG
ABC-type oligopeptide transport system, periplasmic component
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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