Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog T-box(Lys) - Clostridiaceae

Properties
Regulator type: RNA regulatory element
Name: T-box
RFAM: RF00230
Regulation mode:
Biological process: Amino acid metabolism
Effector: Lys-tRNA
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Clostridium kluyveri DSM 555
Clostridium sp. SS2/1
Clostridium cellulolyticum H10
Clostridium phytofermentans ISDg
Clostridium tetani E88
Clostridium acetobutylicum ATCC 824
Clostridium botulinum A str. ATCC 3502
Clostridium novyi NT
Clostridium perfringens ATCC 13124
Clostridium difficile 630
Clostridium beijerincki NCIMB 8052 1 1
Clostridium sp. OhILAs
Clostridium sp. L2-50
Clostridium scindens ATCC 35704
Clostridium nexile DSM 1787
Clostridium leptum DSM 753
Clostridium hiranonis DSM 13275
Clostridium butyricum 5521
Clostridium bolteae ATCC BAA-613
Clostridium bartlettii DSM 16795
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
lysU
 
Clostridium kluyveri DSM 555

Gene: CKL_0178: Lysyl-tRNA synthetase (class II) (EC 6.1.1.6)
 
Clostridium sp. SS2/1

Gene: CLOSS21_02719: Lysyl-tRNA synthetase (class II) (EC 6.1.1.6)
 
Clostridium cellulolyticum H10

Gene: Ccel_0396: Lysyl-tRNA synthetase (class II) (EC 6.1.1.6)
 2
Clostridium phytofermentans ISDg

Gene: null: Lysyl-tRNA synthetase (class II) (EC 6.1.1.6)

Gene: null: Lysyl-tRNA synthetase (class II) (EC 6.1.1.6)
 
Clostridium tetani E88

Gene: CTC00211: Lysyl-tRNA synthetase (class II) (EC 6.1.1.6)
 
Clostridium acetobutylicum ATCC 824

Gene: CAC3197: Lysyl-tRNA synthetase (class II) (EC 6.1.1.6)
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO3518: Lysyl-tRNA synthetase (class II) (EC 6.1.1.6)
 
Clostridium novyi NT

Gene: NT01CX_1046: Lysyl-tRNA synthetase (class II) (EC 6.1.1.6)
 
Clostridium perfringens ATCC 13124

Gene: CPF_2781: Lysyl-tRNA synthetase (class II) (EC 6.1.1.6)
 
Clostridium difficile 630

Gene: CD3552: Lysyl-tRNA synthetase (class II) (EC 6.1.1.6)
*2
Clostridium beijerincki NCIMB 8052

Site:
position = -338
score = 48.08
sequence = AATGAAAACCCAGCA...

Gene: Cbei_3591: Lysyl-tRNA synthetase (class II) (EC 6.1.1.6)

Gene: Cbei_0105: Lysyl-tRNA synthetase (class II) (EC 6.1.1.6)
 
Clostridium sp. OhILAs

Gene: Clos_0450: Lysyl-tRNA synthetase (class II) (EC 6.1.1.6)
 
Clostridium sp. L2-50

Gene: CLOL250_02627: Lysyl-tRNA synthetase (class II) (EC 6.1.1.6)
 
Clostridium scindens ATCC 35704

Gene: CLOSCI_00952: Lysyl-tRNA synthetase (class II) (EC 6.1.1.6)
 
Clostridium nexile DSM 1787

Gene: CLONEX_00555: Lysyl-tRNA synthetase (class II) (EC 6.1.1.6)
 
Clostridium leptum DSM 753

Gene: CLOLEP_01627: Lysyl-tRNA synthetase (class II) (EC 6.1.1.6)
 
Clostridium hiranonis DSM 13275

Gene: CLOHIR_01626: Lysyl-tRNA synthetase (class II) (EC 6.1.1.6)
 
Clostridium butyricum 5521

Gene: CBY_2190: Lysyl-tRNA synthetase (class II) (EC 6.1.1.6)
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_04799: Lysyl-tRNA synthetase (class II) (EC 6.1.1.6)
 
Clostridium bartlettii DSM 16795

Gene: CLOBAR_00239: Lysyl-tRNA synthetase (class II) (EC 6.1.1.6)
Lysyl-tRNA synthetase (class II) (EC 6.1.1.6)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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