Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog T-box(Lys) - Lactobacillaceae

Properties
Regulator type: RNA regulatory element
Name: T-box
RFAM: RF00230
Regulation mode:
Biological process: Amino acid metabolism
Effector: Lys-tRNA
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Oenococcus oeni PSU-1
Lactobacillus reuteri JCM 1112
Lactobacillus helveticus DPC 4571
Lactobacillus fermentum IFO 3956
Lactobacillus salivarius subsp. salivarius UCC118
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
Lactobacillus acidophilus NCFM
Lactobacillus johnsonii NCC 533
Lactobacillus plantarum WCFS1 1 1
Lactobacillus casei ATCC 334
Lactobacillus brevis ATCC 367
Lactobacillus sakei subsp. sakei 23K
Pediococcus pentosaceus ATCC 25745
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
Lactobacillus rhamnosus GG
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
oppA
 
Oenococcus oeni PSU-1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
*
Lactobacillus plantarum WCFS1

Site:
position = -321
score = 58.99
sequence = GATTAAGCGAACGGC...

Gene: lp_3686: ABC-type oligopeptide transport system, periplasmic component
 
Lactobacillus casei ATCC 334
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Lactobacillus rhamnosus GG
ABC-type oligopeptide transport system, periplasmic component
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD