Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
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Regulog T-box(His) - Clostridiaceae

Properties
Regulator type: RNA regulatory element
Name: T-box
RFAM: RF00230
Regulation mode:
Biological process: Amino acid metabolism
Effector: His-tRNA
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Clostridium kluyveri DSM 555
Clostridium sp. SS2/1
Clostridium cellulolyticum H10
Clostridium phytofermentans ISDg
Clostridium tetani E88
Clostridium acetobutylicum ATCC 824
Clostridium botulinum A str. ATCC 3502
Clostridium novyi NT
Clostridium perfringens ATCC 13124
Clostridium difficile 630 3 1
Clostridium beijerincki NCIMB 8052
Clostridium sp. OhILAs 3 1
Clostridium sp. L2-50
Clostridium scindens ATCC 35704
Clostridium nexile DSM 1787
Clostridium leptum DSM 753
Clostridium hiranonis DSM 13275 3 1
Clostridium butyricum 5521
Clostridium bolteae ATCC BAA-613
Clostridium bartlettii DSM 16795
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
hisX
 
Clostridium kluyveri DSM 555

Gene: CKL_0708: Histidine ABC transporter, histidine-binding protein (TC 3.A.1)
 
Clostridium sp. SS2/1

Gene: CLOSS21_00894: Histidine ABC transporter, histidine-binding protein (TC 3.A.1)
 
Clostridium cellulolyticum H10

Gene: Ccel_0885: Histidine ABC transporter, histidine-binding protein (TC 3.A.1)
 
Clostridium phytofermentans ISDg
 
Clostridium tetani E88
 
Clostridium acetobutylicum ATCC 824
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO0446: Histidine ABC transporter, histidine-binding protein (TC 3.A.1)
 
Clostridium novyi NT
 
Clostridium perfringens ATCC 13124

Gene: CPF_1531: Histidine ABC transporter, histidine-binding protein (TC 3.A.1)
*
Clostridium difficile 630

Site:
position = -387
score = 93.69
sequence = TAAATGCTAAGAAAA...

Gene: CD1774: Histidine ABC transporter, histidine-binding protein (TC 3.A.1)
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_1049: Histidine ABC transporter, histidine-binding protein (TC 3.A.1)
*
Clostridium sp. OhILAs

Site:
position = -415
score = 102.76
sequence = TTAAAAAGCGTTGAT...

Gene: Clos_2594: Histidine ABC transporter, histidine-binding protein (TC 3.A.1)
 
Clostridium sp. L2-50

Gene: CLOL250_02269: Histidine ABC transporter, histidine-binding protein (TC 3.A.1)
 
Clostridium scindens ATCC 35704

Gene: CLOSCI_00784: Histidine ABC transporter, histidine-binding protein (TC 3.A.1)
 
Clostridium nexile DSM 1787

Gene: CLONEX_03079: Histidine ABC transporter, histidine-binding protein (TC 3.A.1)
 
Clostridium leptum DSM 753

Gene: CLOLEP_02793: Histidine ABC transporter, histidine-binding protein (TC 3.A.1)
*
Clostridium hiranonis DSM 13275

Site:
position = -406
score = 121.17
sequence = ATAAAGCGAAGAAGA...

Gene: CLOHIR_00267: Histidine ABC transporter, histidine-binding protein (TC 3.A.1)
 
Clostridium butyricum 5521
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_01668: Histidine ABC transporter, histidine-binding protein (TC 3.A.1)
 
Clostridium bartlettii DSM 16795

Gene: CLOBAR_01919: Histidine ABC transporter, histidine-binding protein (TC 3.A.1)
Histidine ABC transporter, histidine-binding protein (TC 3.A.1)
hisY
 
Clostridium kluyveri DSM 555

Gene: CKL_0707: Histidine ABC transporter, permease protein
 
Clostridium sp. SS2/1

Gene: CLOSS21_00895: Histidine ABC transporter, permease protein
 
Clostridium cellulolyticum H10

Gene: Ccel_0886: Histidine ABC transporter, permease protein
 
Clostridium phytofermentans ISDg
 
Clostridium tetani E88
 
Clostridium acetobutylicum ATCC 824
 
Clostridium botulinum A str. ATCC 3502

Gene: CBO0445: Histidine ABC transporter, permease protein
 
Clostridium novyi NT
 
Clostridium perfringens ATCC 13124

Gene: CPF_1532: Histidine ABC transporter, permease protein
 
Clostridium difficile 630

Gene: CD1775: Histidine ABC transporter, permease protein
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_1050: Histidine ABC transporter, permease protein
 
Clostridium sp. OhILAs

Gene: Clos_2593: Histidine ABC transporter, permease protein
 
Clostridium sp. L2-50

Gene: CLOL250_02268: Histidine ABC transporter, permease protein
 
Clostridium scindens ATCC 35704

Gene: CLOSCI_00783: Histidine ABC transporter, permease protein
 
Clostridium nexile DSM 1787

Gene: CLONEX_03078: Histidine ABC transporter, permease protein
 
Clostridium leptum DSM 753

Gene: CLOLEP_02792: Histidine ABC transporter, permease protein
 
Clostridium hiranonis DSM 13275

Gene: CLOHIR_00268: Histidine ABC transporter, permease protein
 
Clostridium butyricum 5521

Gene: CBY_1012: Histidine ABC transporter, permease protein
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_01669: Histidine ABC transporter, permease protein
 
Clostridium bartlettii DSM 16795

Gene: CLOBAR_01918: Histidine ABC transporter, permease protein
Histidine ABC transporter, permease protein
hisZ
 
Clostridium kluyveri DSM 555
 
Clostridium sp. SS2/1

Gene: CLOSS21_00896: Histidine ABC transporter, ATP-binding protein
 
Clostridium cellulolyticum H10

Gene: Ccel_0887: Histidine ABC transporter, ATP-binding protein
 
Clostridium phytofermentans ISDg
 
Clostridium tetani E88
 
Clostridium acetobutylicum ATCC 824
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium novyi NT
 
Clostridium perfringens ATCC 13124

Gene: CPF_1533: Histidine ABC transporter, ATP-binding protein
 
Clostridium difficile 630

Gene: CD1776: Histidine ABC transporter, ATP-binding protein
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_1051: Histidine ABC transporter, ATP-binding protein
 
Clostridium sp. OhILAs

Gene: Clos_2592: Histidine ABC transporter, ATP-binding protein
 
Clostridium sp. L2-50

Gene: CLOL250_02267: Histidine ABC transporter, ATP-binding protein
 
Clostridium scindens ATCC 35704

Gene: CLOSCI_00782: Histidine ABC transporter, ATP-binding protein
 
Clostridium nexile DSM 1787

Gene: CLONEX_03077: Histidine ABC transporter, ATP-binding protein
 
Clostridium leptum DSM 753

Gene: CLOLEP_02791: Histidine ABC transporter, ATP-binding protein
 
Clostridium hiranonis DSM 13275

Gene: CLOHIR_00269: Histidine ABC transporter, ATP-binding protein
 
Clostridium butyricum 5521
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_01670: Histidine ABC transporter, ATP-binding protein
 
Clostridium bartlettii DSM 16795

Gene: CLOBAR_01917: Histidine ABC transporter, ATP-binding protein
Histidine ABC transporter, ATP-binding protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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