Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog T-box(Ala) - Clostridiaceae

Properties
Regulator type: RNA regulatory element
Name: T-box
RFAM: RF00230
Regulation mode:
Biological process: Amino acid metabolism
Effector: Ala-tRNA
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Clostridium kluyveri DSM 555 1 1
Clostridium sp. SS2/1
Clostridium cellulolyticum H10 3 2
Clostridium phytofermentans ISDg 1 1
Clostridium tetani E88 1 1
Clostridium acetobutylicum ATCC 824 1 1
Clostridium botulinum A str. ATCC 3502 1 1
Clostridium novyi NT 3 2
Clostridium perfringens ATCC 13124 3 2
Clostridium difficile 630 1 1
Clostridium beijerincki NCIMB 8052 3 2
Clostridium sp. OhILAs 1 1
Clostridium sp. L2-50
Clostridium scindens ATCC 35704
Clostridium nexile DSM 1787
Clostridium leptum DSM 753 1 1
Clostridium hiranonis DSM 13275 1 1
Clostridium butyricum 5521 3 2
Clostridium bolteae ATCC BAA-613
Clostridium bartlettii DSM 16795 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
alaR
 
Clostridium kluyveri DSM 555
 
Clostridium sp. SS2/1

Gene: CLOSS21_01952: Transcriptional regulator, AsnC family
*
Clostridium cellulolyticum H10

Site:
position = -332
score = 99.79
sequence = TAAAAATGCTGTGAA...

Gene: Ccel_2209: Transcriptional regulator, AsnC family
 
Clostridium phytofermentans ISDg

Gene: null: Transcriptional regulator, AsnC family
 
Clostridium tetani E88
 
Clostridium acetobutylicum ATCC 824
 
Clostridium botulinum A str. ATCC 3502
*
Clostridium novyi NT

Site:
position = -312
score = 111.24
sequence = AAAAGATTGTGATAA...

Gene: NT01CX_1456: Transcriptional regulator, AsnC family
*
Clostridium perfringens ATCC 13124

Site:
position = -435
score = 63.06
sequence = GAAAAACAGTGAAGA...

Gene: CPF_0706: Transcriptional regulator, AsnC family
 
Clostridium difficile 630
*
Clostridium beijerincki NCIMB 8052

Site:
position = -323
score = 115.94
sequence = TTTAAAGATAGTGAT...

Gene: Cbei_4150: Transcriptional regulator, AsnC family
 
Clostridium sp. OhILAs
 
Clostridium sp. L2-50
 
Clostridium scindens ATCC 35704

Gene: CLOSCI_00984: Transcriptional regulator, AsnC family
 
Clostridium nexile DSM 1787

Gene: CLONEX_02092: Transcriptional regulator, AsnC family
 
Clostridium leptum DSM 753

Gene: CLOLEP_03310: Transcriptional regulator, AsnC family
 
Clostridium hiranonis DSM 13275
*
Clostridium butyricum 5521

Site:
position = -418
score = 115.29
sequence = GTTAAAGATAGTGAT...

Gene: CBY_3896: Transcriptional regulator, AsnC family
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_02711: Transcriptional regulator, AsnC family
 
Clostridium bartlettii DSM 16795
Transcriptional regulator, AsnC family
alaT
 
Clostridium kluyveri DSM 555
 
Clostridium sp. SS2/1

Gene: CLOSS21_01951: aminotransferase, class I/II
 
Clostridium cellulolyticum H10

Gene: Ccel_2208: aminotransferase, class I/II
 
Clostridium phytofermentans ISDg

Gene: null: aminotransferase, class I/II
 
Clostridium tetani E88
 
Clostridium acetobutylicum ATCC 824
 
Clostridium botulinum A str. ATCC 3502
 
Clostridium novyi NT

Gene: NT01CX_1457: aminotransferase, class I/II
 
Clostridium perfringens ATCC 13124

Gene: CPF_0707: aminotransferase, class I/II
 
Clostridium difficile 630
 
Clostridium beijerincki NCIMB 8052

Gene: Cbei_4149: aminotransferase, class I/II
 
Clostridium sp. OhILAs
 
Clostridium sp. L2-50
 
Clostridium scindens ATCC 35704

Gene: CLOSCI_00983: aminotransferase, class I/II
 
Clostridium nexile DSM 1787

Gene: CLONEX_02091: aminotransferase, class I/II
 
Clostridium leptum DSM 753

Gene: CLOLEP_03309: aminotransferase, class I/II
 
Clostridium hiranonis DSM 13275
 
Clostridium butyricum 5521

Gene: CBY_3895: aminotransferase, class I/II
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_02710: aminotransferase, class I/II
 
Clostridium bartlettii DSM 16795
aminotransferase, class I/II
 
CRON 2.
alaS
*
Clostridium kluyveri DSM 555

Site:
position = -250
score = 86.44
sequence = ATGTGGCAGTGAATA...

Gene: CKL_1324: Alanyl-tRNA synthetase (EC 6.1.1.7)
 
Clostridium sp. SS2/1

Gene: CLOSS21_01816: Alanyl-tRNA synthetase (EC 6.1.1.7)
*
Clostridium cellulolyticum H10

Site:
position = -289
score = 117.33
sequence = AAGAATGGCAATGAA...

Gene: Ccel_2096: Alanyl-tRNA synthetase (EC 6.1.1.7)
*2
Clostridium phytofermentans ISDg

Site:
position = -307
score = 100.76
sequence = AAAAGGCAAGGAAGA...

Gene: null: Alanyl-tRNA synthetase (EC 6.1.1.7)

Gene: null: Alanyl-tRNA synthetase (EC 6.1.1.7)
*
Clostridium tetani E88

Site:
position = -228
score = 102.12
sequence = TTATGACAATGATAA...

Gene: CTC01055: Alanyl-tRNA synthetase (EC 6.1.1.7)
*
Clostridium acetobutylicum ATCC 824

Site:
position = -223
score = 99.09
sequence = TTAGAGTGATGATGA...

Gene: CAC1678: Alanyl-tRNA synthetase (EC 6.1.1.7)
*
Clostridium botulinum A str. ATCC 3502

Site:
position = -234
score = 90.29
sequence = ATATATAGTGATGAT...

Gene: CBO2564: Alanyl-tRNA synthetase (EC 6.1.1.7)
*
Clostridium novyi NT

Site:
position = -254
score = 91.37
sequence = ATATTAGGCGATGAT...

Gene: NT01CX_2280: Alanyl-tRNA synthetase (EC 6.1.1.7)
*
Clostridium perfringens ATCC 13124

Site:
position = -330
score = 102.48
sequence = ATGAAAAGCGTTGAC...

Gene: CPF_2033: Alanyl-tRNA synthetase (EC 6.1.1.7)
*
Clostridium difficile 630

Site:
position = -305
score = 125.16
sequence = CAAATACAGTGATAA...

Gene: CD1282: Alanyl-tRNA synthetase (EC 6.1.1.7)
*
Clostridium beijerincki NCIMB 8052

Site:
position = -454
score = 101.69
sequence = ATTAAGCGATGAATA...

Gene: Cbei_1104: Alanyl-tRNA synthetase (EC 6.1.1.7)
*
Clostridium sp. OhILAs

Site:
position = -361
score = 142.85
sequence = GTTAAAAGTGATGAT...

Gene: Clos_1666: Alanyl-tRNA synthetase (EC 6.1.1.7)
 
Clostridium sp. L2-50

Gene: CLOL250_00149: Alanyl-tRNA synthetase (EC 6.1.1.7)
 
Clostridium scindens ATCC 35704

Gene: CLOSCI_00441: Alanyl-tRNA synthetase (EC 6.1.1.7)
 
Clostridium nexile DSM 1787

Gene: CLONEX_02964: Alanyl-tRNA synthetase (EC 6.1.1.7)
*
Clostridium leptum DSM 753

Site:
position = -245
score = 84.29
sequence = AATAGGCTGTGAAGG...

Gene: CLOLEP_01892: Alanyl-tRNA synthetase (EC 6.1.1.7)
*
Clostridium hiranonis DSM 13275

Site:
position = -192
score = 113.92
sequence = CAAATGCAAAGAAAA...

Gene: CLOHIR_01199: Alanyl-tRNA synthetase (EC 6.1.1.7)
*
Clostridium butyricum 5521

Site:
position = -352
score = 107.55
sequence = ATATTAAGCGATGAA...

Gene: CBY_2616: Alanyl-tRNA synthetase (EC 6.1.1.7)
 
Clostridium bolteae ATCC BAA-613

Gene: CLOBOL_04007: Alanyl-tRNA synthetase (EC 6.1.1.7)
*
Clostridium bartlettii DSM 16795

Site:
position = -285
score = 131.12
sequence = TTTAAATACAATGAA...

Gene: CLOBAR_02185: Alanyl-tRNA synthetase (EC 6.1.1.7)
Alanyl-tRNA synthetase (EC 6.1.1.7)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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