Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog T-box(Ile) - Lactobacillaceae

Properties
Regulator type: RNA regulatory element
Name: T-box
RFAM: RF00230
Regulation mode:
Biological process: Amino acid metabolism
Effector: Ile-tRNA
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Oenococcus oeni PSU-1 1 1
Lactobacillus reuteri JCM 1112 2 2
Lactobacillus helveticus DPC 4571 2 2
Lactobacillus fermentum IFO 3956 2 2
Lactobacillus salivarius subsp. salivarius UCC118 2 2
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 1 1
Lactobacillus acidophilus NCFM 6 4
Lactobacillus johnsonii NCC 533 3 3
Lactobacillus plantarum WCFS1 2 2
Lactobacillus casei ATCC 334 1 1
Lactobacillus brevis ATCC 367 3 3
Lactobacillus sakei subsp. sakei 23K 1 1
Pediococcus pentosaceus ATCC 25745 1 1
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 1 1
Lactobacillus rhamnosus GG 2 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
oppA
 
Oenococcus oeni PSU-1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
*4
Lactobacillus acidophilus NCFM

Site:
position = -499
score = 98.45
sequence = AAGAACAGCTTTGAT...

Gene: LBA1216: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)

Gene: LBA1345: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)

Gene: LBA1346: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)

Site:
position = -318
score = 92.85
sequence = TAATTTAGCTTTGAT...

Gene: LBA1347: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)
*
Lactobacillus johnsonii NCC 533

Site:
position = -318
score = 115.14
sequence = AAACAGCTTTGATAA...

Gene: LJ1574: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)
 
Lactobacillus plantarum WCFS1
 
Lactobacillus casei ATCC 334
*
Lactobacillus brevis ATCC 367

Site:
position = -367
score = 84.72
sequence = TTAAAAAGTGATGAT...

Gene: LVIS_0011: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_1853: Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)
 
Lactobacillus rhamnosus GG
Oligopeptide ABC transporter, periplasmic oligopeptide-binding protein OppA (TC 3.A.1.5.1)
 
CRON 2.
ilvE
 
Oenococcus oeni PSU-1

Gene: OEOE_1296: Branched-chain amino acid aminotransferase (EC 2.6.1.42)
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571

Gene: lhv_1426: Branched-chain amino acid aminotransferase (EC 2.6.1.42)
*2
Lactobacillus fermentum IFO 3956

Site:
position = -444
score = 90.89
sequence = AAACAACGCGATGAG...

Gene: LAF_0922: Branched-chain amino acid aminotransferase (EC 2.6.1.42)

Gene: LAF_0347: Branched-chain amino acid aminotransferase (EC 2.6.1.42)
 
Lactobacillus salivarius subsp. salivarius UCC118

Gene: LSL_0063: Branched-chain amino acid aminotransferase (EC 2.6.1.42)
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Gene: LBUL_1219: Branched-chain amino acid aminotransferase (EC 2.6.1.42)
 
Lactobacillus acidophilus NCFM

Gene: LBA1341: Branched-chain amino acid aminotransferase (EC 2.6.1.42)
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1

Gene: lp_2390: Branched-chain amino acid aminotransferase (EC 2.6.1.42)
 
Lactobacillus casei ATCC 334

Gene: LSEI_2041: Branched-chain amino acid aminotransferase (EC 2.6.1.42)
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_1319: Branched-chain amino acid aminotransferase (EC 2.6.1.42)
 
Lactobacillus rhamnosus GG

Gene: LGG_02028: Branched-chain amino acid aminotransferase (EC 2.6.1.42)
Branched-chain amino acid aminotransferase (EC 2.6.1.42)
 
CRON 3.
brnQ
 
Oenococcus oeni PSU-1

Gene: OEOE_0443: Branched-chain amino acid transport system carrier protein
*
Lactobacillus reuteri JCM 1112

Site:
position = -290
score = 109.58
sequence = CGATCGCAATGAGAA...

Gene: LAR_1696: Branched-chain amino acid transport system carrier protein
*
Lactobacillus helveticus DPC 4571

Site:
position = -264
score = 116.23
sequence = TGAAAACAAAGAGAA...

Gene: lhv_1189: Branched-chain amino acid transport system carrier protein
 
Lactobacillus fermentum IFO 3956
*
Lactobacillus salivarius subsp. salivarius UCC118

Site:
position = -378
score = 97.76
sequence = AAAGAACGCAATGAG...

Gene: LSL_1636: Branched-chain amino acid transport system carrier protein
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
*
Lactobacillus acidophilus NCFM

Site:
position = -313
score = 99.92
sequence = TGAAAACAAAAAGAA...

Gene: LBA1036: Branched-chain amino acid transport system carrier protein
*
Lactobacillus johnsonii NCC 533

Site:
position = -180
score = 95.0
sequence = TGAAAACAAAGAGAA...

Gene: LJ1137: Branched-chain amino acid transport system carrier protein
*
Lactobacillus plantarum WCFS1

Site:
position = -349
score = 87.81
sequence = CAAACACGCCGATGA...

Gene: lp_3466: Branched-chain amino acid transport system carrier protein
 
Lactobacillus casei ATCC 334

Gene: LSEI_0604: Branched-chain amino acid transport system carrier protein
*
Lactobacillus brevis ATCC 367

Site:
position = -289
score = 81.72
sequence = TTATAAAACGTTGAA...

Gene: LVIS_2122: Branched-chain amino acid transport system carrier protein
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_1440: Branched-chain amino acid transport system carrier protein
*
Lactobacillus rhamnosus GG

Site:
position = -414
score = 87.86
sequence = TACAAATGCAACGCG...

Gene: LGG_00575: Branched-chain amino acid transport system carrier protein
Branched-chain amino acid transport system carrier protein
 
CRON 4.
ileS
*
Oenococcus oeni PSU-1

Site:
position = -216
score = 53.75
sequence = TAATGACTTTATATT...

Gene: OEOE_1139: Isoleucyl-tRNA synthetase (EC 6.1.1.5)
*
Lactobacillus reuteri JCM 1112

Site:
position = -276
score = 90.72
sequence = TAAAATCGTTGAAGA...

Gene: LAR_0578: Isoleucyl-tRNA synthetase (EC 6.1.1.5)
*
Lactobacillus helveticus DPC 4571

Site:
position = -223
score = 68.51
sequence = TAAAAATTAGATTGA...

Gene: lhv_0863: Isoleucyl-tRNA synthetase (EC 6.1.1.5)
*
Lactobacillus fermentum IFO 3956

Site:
position = -273
score = 103.55
sequence = TAAAAGCATTGATGG...

Gene: LAF_0582: Isoleucyl-tRNA synthetase (EC 6.1.1.5)
*
Lactobacillus salivarius subsp. salivarius UCC118

Site:
position = -274
score = 77.26
sequence = TAATTTATTTCTGAA...

Gene: LSL_1042: Isoleucyl-tRNA synthetase (EC 6.1.1.5)
*
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Site:
position = -242
score = 45.09
sequence = TTAATAAATCAGACT...

Gene: LBUL_0681: Isoleucyl-tRNA synthetase (EC 6.1.1.5)
*
Lactobacillus acidophilus NCFM

Site:
position = -228
score = 62.3
sequence = AAATAATAATTAGAT...

Gene: LBA0817: Isoleucyl-tRNA synthetase (EC 6.1.1.5)
*
Lactobacillus johnsonii NCC 533

Site:
position = -204
score = 62.9
sequence = TTTAAGTCGACAGTA...

Gene: LJ0980: Isoleucyl-tRNA synthetase (EC 6.1.1.5)
*
Lactobacillus plantarum WCFS1

Site:
position = -284
score = 97.11
sequence = ATTGAATGTATTGAG...

Gene: lp_2187: Isoleucyl-tRNA synthetase (EC 6.1.1.5)
*
Lactobacillus casei ATCC 334

Site:
position = -252
score = 81.74
sequence = CAATAACGTATGAAC...

Gene: LSEI_1280: Isoleucyl-tRNA synthetase (EC 6.1.1.5)
*
Lactobacillus brevis ATCC 367

Site:
position = -356
score = 75.89
sequence = AATAATGGCATGAAG...

Gene: LVIS_1441: Isoleucyl-tRNA synthetase (EC 6.1.1.5)
*
Lactobacillus sakei subsp. sakei 23K

Site:
position = -253
score = 98.65
sequence = AACAGACAATAACAA...

Gene: LSA0756: Isoleucyl-tRNA synthetase (EC 6.1.1.5)
*
Pediococcus pentosaceus ATCC 25745

Site:
position = -262
score = 123.77
sequence = GAATAAAACGTTAAA...

Gene: PEPE_1179: Isoleucyl-tRNA synthetase (EC 6.1.1.5)
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Site:
position = -308
score = 64.27
sequence = TATAAAAAGCGTAAC...

Gene: LEUM_1487: Isoleucyl-tRNA synthetase (EC 6.1.1.5)
*
Lactobacillus rhamnosus GG

Site:
position = -248
score = 87.8
sequence = CAATAACGTATGAAC...

Gene: LGG_01291: Isoleucyl-tRNA synthetase (EC 6.1.1.5)
Isoleucyl-tRNA synthetase (EC 6.1.1.5)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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