Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog T-box(His) - Lactobacillaceae

Properties
Regulator type: RNA regulatory element
Name: T-box
RFAM: RF00230
Regulation mode:
Biological process: Amino acid metabolism
Effector: His-tRNA
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Oenococcus oeni PSU-1
Lactobacillus reuteri JCM 1112
Lactobacillus helveticus DPC 4571
Lactobacillus fermentum IFO 3956 10 1
Lactobacillus salivarius subsp. salivarius UCC118
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
Lactobacillus acidophilus NCFM
Lactobacillus johnsonii NCC 533
Lactobacillus plantarum WCFS1 10 1
Lactobacillus casei ATCC 334 10 1
Lactobacillus brevis ATCC 367
Lactobacillus sakei subsp. sakei 23K
Pediococcus pentosaceus ATCC 25745
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
Lactobacillus rhamnosus GG 11 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
hisZ
 
Oenococcus oeni PSU-1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571
*
Lactobacillus fermentum IFO 3956

Site:
position = -272
score = 69.36
sequence = AATGAGTAAGGACCA...

Gene: LAF_0755: ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17)
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
*
Lactobacillus plantarum WCFS1

Site:
position = -408
score = 101.38
sequence = ATAAACGGTTGTGAT...

Gene: lp_2561: ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17)
*
Lactobacillus casei ATCC 334

Site:
position = -382
score = 113.8
sequence = ACATGAAGTTGTGAT...

Gene: LSEI_1435: ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17)
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
*
Lactobacillus rhamnosus GG

Site:
position = -375
score = 99.64
sequence = CCATGAAGTTGTGAT...

Gene: LGG_01445: ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17)
ATP phosphoribosyltransferase regulatory subunit (EC 2.4.2.17)
hisG
 
Oenococcus oeni PSU-1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus fermentum IFO 3956

Gene: LAF_0756: ATP phosphoribosyltransferase catalytic subunit (EC 2.4.2.17)
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1

Gene: lp_2560: ATP phosphoribosyltransferase catalytic subunit (EC 2.4.2.17)
 
Lactobacillus casei ATCC 334

Gene: LSEI_1434: ATP phosphoribosyltransferase catalytic subunit (EC 2.4.2.17)
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Lactobacillus rhamnosus GG

Gene: LGG_01444: ATP phosphoribosyltransferase catalytic subunit (EC 2.4.2.17)
ATP phosphoribosyltransferase catalytic subunit (EC 2.4.2.17)
hisD
 
Oenococcus oeni PSU-1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus fermentum IFO 3956

Gene: LAF_0757: Histidinol dehydrogenase (EC 1.1.1.23)
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1

Gene: lp_2559: Histidinol dehydrogenase (EC 1.1.1.23)
 
Lactobacillus casei ATCC 334

Gene: LSEI_1433: Histidinol dehydrogenase (EC 1.1.1.23)
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Lactobacillus rhamnosus GG

Gene: LGG_01443: Histidinol dehydrogenase (EC 1.1.1.23)
Histidinol dehydrogenase (EC 1.1.1.23)
LGG_01442
 
Oenococcus oeni PSU-1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1
 
Lactobacillus casei ATCC 334
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Lactobacillus rhamnosus GG

Gene: LGG_01442: predicted ORF
predicted ORF
hisB
 
Oenococcus oeni PSU-1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus fermentum IFO 3956

Gene: LAF_0758: Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1

Gene: lp_2558: Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)
 
Lactobacillus casei ATCC 334

Gene: LSEI_1432: Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Lactobacillus rhamnosus GG

Gene: LGG_01441: Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)
Imidazoleglycerol-phosphate dehydratase (EC 4.2.1.19)
hisH
 
Oenococcus oeni PSU-1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus fermentum IFO 3956

Gene: LAF_0759: Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-)
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1

Gene: lp_2557: Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-)
 
Lactobacillus casei ATCC 334

Gene: LSEI_1431: Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-)
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Lactobacillus rhamnosus GG

Gene: LGG_01440: Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-)
Imidazole glycerol phosphate synthase amidotransferase subunit (EC 2.4.2.-)
hisA
 
Oenococcus oeni PSU-1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus fermentum IFO 3956

Gene: LAF_0760: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16)
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1

Gene: lp_2556: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16)
 
Lactobacillus casei ATCC 334

Gene: LSEI_1430: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16)
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Lactobacillus rhamnosus GG

Gene: LGG_01439: Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16)
Phosphoribosylformimino-5-aminoimidazole carboxamide ribotide isomerase (EC 5.3.1.16)
hisF
 
Oenococcus oeni PSU-1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus fermentum IFO 3956

Gene: LAF_0761: Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-)
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1

Gene: lp_2554: Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-)
 
Lactobacillus casei ATCC 334

Gene: LSEI_1429: Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-)
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Lactobacillus rhamnosus GG

Gene: LGG_01438: Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-)
Imidazole glycerol phosphate synthase cyclase subunit (EC 4.1.3.-)
hisI
 
Oenococcus oeni PSU-1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus fermentum IFO 3956

Gene: LAF_0762: Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1

Gene: lp_2553: Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)
 
Lactobacillus casei ATCC 334

Gene: LSEI_1428: Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Lactobacillus rhamnosus GG

Gene: LGG_01437: Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)
Phosphoribosyl-AMP cyclohydrolase (EC 3.5.4.19)
hisE
 
Oenococcus oeni PSU-1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus fermentum IFO 3956

Gene: LAF_0763: Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31)
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1

Gene: lp_2552: Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31)
 
Lactobacillus casei ATCC 334

Gene: LSEI_1427: Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31)
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Lactobacillus rhamnosus GG

Gene: LGG_01436: Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31)
Phosphoribosyl-ATP pyrophosphatase (EC 3.6.1.31)
hisC
 
Oenococcus oeni PSU-1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus fermentum IFO 3956

Gene: LAF_0764: Histidinol-phosphate aminotransferase (EC 2.6.1.9) @ Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57)
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1

Gene: lp_2551: Histidinol-phosphate aminotransferase (EC 2.6.1.9) @ Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57)
 
Lactobacillus casei ATCC 334

Gene: LSEI_1426: Histidinol-phosphate aminotransferase (EC 2.6.1.9) @ Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57)
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Lactobacillus rhamnosus GG

Gene: LGG_01435: Histidinol-phosphate aminotransferase (EC 2.6.1.9) @ Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57)
Histidinol-phosphate aminotransferase (EC 2.6.1.9) @ Biosynthetic Aromatic amino acid aminotransferase beta (EC 2.6.1.57)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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