Regulog T-box(Gly) - Lactobacillaceae
| Regulator type: | RNA regulatory element |
| Name: | T-box |
| RFAM: | RF00230 |
| Regulation mode: | |
| Biological process: | Amino acid metabolism |
| Effector: | Gly-tRNA |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Lactobacillaceae
- By RNA motif - T-box
- By effector - Gly-tRNA
- By pathway - Amino acid metabolism
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| glyQ |
*
Oenococcus oeni PSU-1 Site: position = -157 score = 31.46 sequence = TTATAAAGTGTCGCA... Gene: OEOE_0992: Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14) |
*
Lactobacillus reuteri JCM 1112 Site: position = -216 score = 50.07 sequence = TATTGGCAATGACAG... Gene: LAR_0711: Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14) |
*
Lactobacillus helveticus DPC 4571 Site: position = -213 score = 51.35 sequence = GTATTTGACAATGAT... Gene: lhv_1299: Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14) |
*
Lactobacillus fermentum IFO 3956 Site: position = -221 score = 44.82 sequence = CTGCAACGATGACGG... Gene: LAF_0842: Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14) |
*
Lactobacillus salivarius subsp. salivarius UCC118 Site: position = -259 score = 55.52 sequence = AAAGTAAACATTGAT... Gene: LSL_0912: Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14) |
*
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Site: position = -214 score = 54.69 sequence = TATATTGGTAATGAT... Gene: LBUL_1167: Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14) |
*
Lactobacillus acidophilus NCFM Site: position = -210 score = 65.65 sequence = GTATTTGACAATAAT... Gene: LBA1199: Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14) |
*
Lactobacillus johnsonii NCC 533 Site: position = -209 score = 64.46 sequence = TTTGACAACTATAAA... Gene: LJ1320: Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14) |
*
Lactobacillus plantarum WCFS1 Site: position = -283 score = 65.75 sequence = TAGTTAAGTGTTGAT... Gene: lp_1965: Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14) |
*
Lactobacillus casei ATCC 334 Site: position = -241 score = 50.94 sequence = TGAATCGGTGATGAG... Gene: LSEI_1504: Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14) |
*
Lactobacillus brevis ATCC 367 Site: position = -245 score = 58.38 sequence = AGTCGATTATGATGA... Gene: LVIS_0753: Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14) |
*
Lactobacillus sakei subsp. sakei 23K Site: position = -222 score = 52.71 sequence = AATAGACGTTGAAGA... Gene: LSA0880: Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14) |
*
Pediococcus pentosaceus ATCC 25745 Site: position = -228 score = 55.69 sequence = ATAGAGGACAGTGAA... Gene: PEPE_1102: Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14) |
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -322 score = 34.78 sequence = AATTTAATTGTTAAA... Gene: LEUM_1194: Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14) |
*
Lactobacillus rhamnosus GG Site: position = -255 score = 53.74 sequence = TGAATCGGTGATGAG... Gene: LGG_01514: Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14) |
Glycyl-tRNA synthetase alpha chain (EC 6.1.1.14) |
| OEOE_0993 |
Gene: OEOE_0993: hypothetical protein |
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hypothetical protein |
| glyS |
Gene: OEOE_0994: Glycyl-tRNA synthetase beta chain (EC 6.1.1.14) |
Gene: LAR_0712: Glycyl-tRNA synthetase beta chain (EC 6.1.1.14) |
Gene: lhv_1298: Glycyl-tRNA synthetase beta chain (EC 6.1.1.14) |
Gene: LAF_0843: Glycyl-tRNA synthetase beta chain (EC 6.1.1.14) |
Gene: LSL_0911: Glycyl-tRNA synthetase beta chain (EC 6.1.1.14) |
Gene: LBUL_1166: Glycyl-tRNA synthetase beta chain (EC 6.1.1.14) |
Gene: LBA1198: Glycyl-tRNA synthetase beta chain (EC 6.1.1.14) |
Gene: LJ1319: Glycyl-tRNA synthetase beta chain (EC 6.1.1.14) |
Gene: lp_1964: Glycyl-tRNA synthetase beta chain (EC 6.1.1.14) |
Gene: LSEI_1503: Glycyl-tRNA synthetase beta chain (EC 6.1.1.14) |
Gene: LVIS_0754: Glycyl-tRNA synthetase beta chain (EC 6.1.1.14) |
Gene: LSA0881: Glycyl-tRNA synthetase beta chain (EC 6.1.1.14) |
Gene: PEPE_1101: Glycyl-tRNA synthetase beta chain (EC 6.1.1.14) |
Gene: LEUM_1193: Glycyl-tRNA synthetase beta chain (EC 6.1.1.14) |
Gene: LGG_01513: Glycyl-tRNA synthetase beta chain (EC 6.1.1.14) |
Glycyl-tRNA synthetase beta chain (EC 6.1.1.14) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
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Regulatory Sites | [ FASTA format ] | DOWNLOAD |