Regulog T-box(Cys) - Lactobacillaceae
| Regulator type: | RNA regulatory element |
| Name: | T-box |
| RFAM: | RF00230 |
| Regulation mode: | |
| Biological process: | Amino acid metabolism |
| Effector: | Cys-tRNA |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Lactobacillaceae
- By RNA motif - T-box
- By effector - Cys-tRNA
- By pathway - Amino acid metabolism
| Genome | Genes | Operons |
|---|---|---|
| Oenococcus oeni PSU-1 | ||
| Lactobacillus reuteri JCM 1112 | ||
| Lactobacillus helveticus DPC 4571 | ||
| Lactobacillus fermentum IFO 3956 | ||
| Lactobacillus salivarius subsp. salivarius UCC118 | ||
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | ||
| Lactobacillus acidophilus NCFM | ||
| Lactobacillus johnsonii NCC 533 | ||
| Lactobacillus plantarum WCFS1 | ||
| Lactobacillus casei ATCC 334 | ||
| Lactobacillus brevis ATCC 367 | ||
| Lactobacillus sakei subsp. sakei 23K | 3 | 1 |
| Pediococcus pentosaceus ATCC 25745 | ||
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | ||
| Lactobacillus rhamnosus GG |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| cysS |
Gene: OEOE_1559: Cysteinyl-tRNA synthetase (EC 6.1.1.16) |
Gene: LAR_0291: Cysteinyl-tRNA synthetase (EC 6.1.1.16) |
Gene: lhv_0370: Cysteinyl-tRNA synthetase (EC 6.1.1.16) |
Gene: LAF_0261: Cysteinyl-tRNA synthetase (EC 6.1.1.16) |
Gene: LSL_1247: Cysteinyl-tRNA synthetase (EC 6.1.1.16) |
Gene: LBUL_1554: Cysteinyl-tRNA synthetase (EC 6.1.1.16) |
Gene: LBA0348: Cysteinyl-tRNA synthetase (EC 6.1.1.16) |
Gene: LJ0400: Cysteinyl-tRNA synthetase (EC 6.1.1.16) |
Gene: lp_0610: Cysteinyl-tRNA synthetase (EC 6.1.1.16) |
Gene: LSEI_2308: Cysteinyl-tRNA synthetase (EC 6.1.1.16) |
Gene: LVIS_0580: Cysteinyl-tRNA synthetase (EC 6.1.1.16) |
*
Lactobacillus sakei subsp. sakei 23K Site: position = -732 score = 86.51 sequence = GTATAAATTGATGAA... Gene: LSA1681: Cysteinyl-tRNA synthetase (EC 6.1.1.16) |
Gene: PEPE_1500: Cysteinyl-tRNA synthetase (EC 6.1.1.16) |
Gene: LEUM_0162: Cysteinyl-tRNA synthetase (EC 6.1.1.16) |
Gene: LGG_02326: Cysteinyl-tRNA synthetase (EC 6.1.1.16) |
Cysteinyl-tRNA synthetase (EC 6.1.1.16) |
| ytbE |
Gene: OEOE_1426: COG1939: Ribonuclease III family protein |
Gene: LAR_0292: COG1939: Ribonuclease III family protein |
Gene: lhv_0371: COG1939: Ribonuclease III family protein |
Gene: LAF_0262: COG1939: Ribonuclease III family protein |
Gene: LSL_1246: COG1939: Ribonuclease III family protein |
Gene: LBUL_1553: COG1939: Ribonuclease III family protein |
Gene: LBA0349: COG1939: Ribonuclease III family protein |
Gene: LJ0401: COG1939: Ribonuclease III family protein |
Gene: lp_0611: COG1939: Ribonuclease III family protein |
Gene: LSEI_2307: COG1939: Ribonuclease III family protein |
Gene: LVIS_0581: COG1939: Ribonuclease III family protein |
Gene: LSA1680: COG1939: Ribonuclease III family protein |
Gene: PEPE_1499: COG1939: Ribonuclease III family protein |
Gene: LEUM_1823: COG1939: Ribonuclease III family protein |
Gene: LGG_02325: COG1939: Ribonuclease III family protein |
COG1939: Ribonuclease III family protein |
| trmH |
Gene: OEOE_1425: TrmH family tRNA/rRNA methyltransferase YacO (EC 2.1.1.-) |
Gene: LAR_0293: TrmH family tRNA/rRNA methyltransferase YacO (EC 2.1.1.-) |
Gene: lhv_0372: TrmH family tRNA/rRNA methyltransferase YacO (EC 2.1.1.-) |
Gene: LAF_0263: TrmH family tRNA/rRNA methyltransferase YacO (EC 2.1.1.-) |
Gene: LSL_1245: TrmH family tRNA/rRNA methyltransferase YacO (EC 2.1.1.-) |
Gene: LBUL_1552: TrmH family tRNA/rRNA methyltransferase YacO (EC 2.1.1.-) |
Gene: LBA0350: TrmH family tRNA/rRNA methyltransferase YacO (EC 2.1.1.-) |
Gene: LJ0402: TrmH family tRNA/rRNA methyltransferase YacO (EC 2.1.1.-) |
Gene: lp_0612: TrmH family tRNA/rRNA methyltransferase YacO (EC 2.1.1.-) |
Gene: LSEI_2306: TrmH family tRNA/rRNA methyltransferase YacO (EC 2.1.1.-) |
Gene: LVIS_0582: TrmH family tRNA/rRNA methyltransferase YacO (EC 2.1.1.-) |
Gene: LSA1679: TrmH family tRNA/rRNA methyltransferase YacO (EC 2.1.1.-) |
Gene: PEPE_1498: TrmH family tRNA/rRNA methyltransferase YacO (EC 2.1.1.-) |
Gene: LEUM_1822: TrmH family tRNA/rRNA methyltransferase YacO (EC 2.1.1.-) |
Gene: LGG_02324: TrmH family tRNA/rRNA methyltransferase YacO (EC 2.1.1.-) |
TrmH family tRNA/rRNA methyltransferase YacO (EC 2.1.1.-) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |