Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog T-box(Cys) - Lactobacillaceae

Properties
Regulator type: RNA regulatory element
Name: T-box
RFAM: RF00230
Regulation mode:
Biological process: Amino acid metabolism
Effector: Cys-tRNA
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Oenococcus oeni PSU-1
Lactobacillus reuteri JCM 1112
Lactobacillus helveticus DPC 4571
Lactobacillus fermentum IFO 3956
Lactobacillus salivarius subsp. salivarius UCC118
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
Lactobacillus acidophilus NCFM
Lactobacillus johnsonii NCC 533
Lactobacillus plantarum WCFS1
Lactobacillus casei ATCC 334
Lactobacillus brevis ATCC 367
Lactobacillus sakei subsp. sakei 23K 3 1
Pediococcus pentosaceus ATCC 25745
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
Lactobacillus rhamnosus GG
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
cysS
 
Oenococcus oeni PSU-1

Gene: OEOE_1559: Cysteinyl-tRNA synthetase (EC 6.1.1.16)
 
Lactobacillus reuteri JCM 1112

Gene: LAR_0291: Cysteinyl-tRNA synthetase (EC 6.1.1.16)
 
Lactobacillus helveticus DPC 4571

Gene: lhv_0370: Cysteinyl-tRNA synthetase (EC 6.1.1.16)
 
Lactobacillus fermentum IFO 3956

Gene: LAF_0261: Cysteinyl-tRNA synthetase (EC 6.1.1.16)
 
Lactobacillus salivarius subsp. salivarius UCC118

Gene: LSL_1247: Cysteinyl-tRNA synthetase (EC 6.1.1.16)
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Gene: LBUL_1554: Cysteinyl-tRNA synthetase (EC 6.1.1.16)
 
Lactobacillus acidophilus NCFM

Gene: LBA0348: Cysteinyl-tRNA synthetase (EC 6.1.1.16)
 
Lactobacillus johnsonii NCC 533

Gene: LJ0400: Cysteinyl-tRNA synthetase (EC 6.1.1.16)
 
Lactobacillus plantarum WCFS1

Gene: lp_0610: Cysteinyl-tRNA synthetase (EC 6.1.1.16)
 
Lactobacillus casei ATCC 334

Gene: LSEI_2308: Cysteinyl-tRNA synthetase (EC 6.1.1.16)
 
Lactobacillus brevis ATCC 367

Gene: LVIS_0580: Cysteinyl-tRNA synthetase (EC 6.1.1.16)
*
Lactobacillus sakei subsp. sakei 23K

Site:
position = -732
score = 86.51
sequence = GTATAAATTGATGAA...

Gene: LSA1681: Cysteinyl-tRNA synthetase (EC 6.1.1.16)
 
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_1500: Cysteinyl-tRNA synthetase (EC 6.1.1.16)
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_0162: Cysteinyl-tRNA synthetase (EC 6.1.1.16)
 
Lactobacillus rhamnosus GG

Gene: LGG_02326: Cysteinyl-tRNA synthetase (EC 6.1.1.16)
Cysteinyl-tRNA synthetase (EC 6.1.1.16)
ytbE
 
Oenococcus oeni PSU-1

Gene: OEOE_1426: COG1939: Ribonuclease III family protein
 
Lactobacillus reuteri JCM 1112

Gene: LAR_0292: COG1939: Ribonuclease III family protein
 
Lactobacillus helveticus DPC 4571

Gene: lhv_0371: COG1939: Ribonuclease III family protein
 
Lactobacillus fermentum IFO 3956

Gene: LAF_0262: COG1939: Ribonuclease III family protein
 
Lactobacillus salivarius subsp. salivarius UCC118

Gene: LSL_1246: COG1939: Ribonuclease III family protein
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Gene: LBUL_1553: COG1939: Ribonuclease III family protein
 
Lactobacillus acidophilus NCFM

Gene: LBA0349: COG1939: Ribonuclease III family protein
 
Lactobacillus johnsonii NCC 533

Gene: LJ0401: COG1939: Ribonuclease III family protein
 
Lactobacillus plantarum WCFS1

Gene: lp_0611: COG1939: Ribonuclease III family protein
 
Lactobacillus casei ATCC 334

Gene: LSEI_2307: COG1939: Ribonuclease III family protein
 
Lactobacillus brevis ATCC 367

Gene: LVIS_0581: COG1939: Ribonuclease III family protein
 
Lactobacillus sakei subsp. sakei 23K

Gene: LSA1680: COG1939: Ribonuclease III family protein
 
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_1499: COG1939: Ribonuclease III family protein
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_1823: COG1939: Ribonuclease III family protein
 
Lactobacillus rhamnosus GG

Gene: LGG_02325: COG1939: Ribonuclease III family protein
COG1939: Ribonuclease III family protein
trmH
 
Oenococcus oeni PSU-1

Gene: OEOE_1425: TrmH family tRNA/rRNA methyltransferase YacO (EC 2.1.1.-)
 
Lactobacillus reuteri JCM 1112

Gene: LAR_0293: TrmH family tRNA/rRNA methyltransferase YacO (EC 2.1.1.-)
 
Lactobacillus helveticus DPC 4571

Gene: lhv_0372: TrmH family tRNA/rRNA methyltransferase YacO (EC 2.1.1.-)
 
Lactobacillus fermentum IFO 3956

Gene: LAF_0263: TrmH family tRNA/rRNA methyltransferase YacO (EC 2.1.1.-)
 
Lactobacillus salivarius subsp. salivarius UCC118

Gene: LSL_1245: TrmH family tRNA/rRNA methyltransferase YacO (EC 2.1.1.-)
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Gene: LBUL_1552: TrmH family tRNA/rRNA methyltransferase YacO (EC 2.1.1.-)
 
Lactobacillus acidophilus NCFM

Gene: LBA0350: TrmH family tRNA/rRNA methyltransferase YacO (EC 2.1.1.-)
 
Lactobacillus johnsonii NCC 533

Gene: LJ0402: TrmH family tRNA/rRNA methyltransferase YacO (EC 2.1.1.-)
 
Lactobacillus plantarum WCFS1

Gene: lp_0612: TrmH family tRNA/rRNA methyltransferase YacO (EC 2.1.1.-)
 
Lactobacillus casei ATCC 334

Gene: LSEI_2306: TrmH family tRNA/rRNA methyltransferase YacO (EC 2.1.1.-)
 
Lactobacillus brevis ATCC 367

Gene: LVIS_0582: TrmH family tRNA/rRNA methyltransferase YacO (EC 2.1.1.-)
 
Lactobacillus sakei subsp. sakei 23K

Gene: LSA1679: TrmH family tRNA/rRNA methyltransferase YacO (EC 2.1.1.-)
 
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_1498: TrmH family tRNA/rRNA methyltransferase YacO (EC 2.1.1.-)
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_1822: TrmH family tRNA/rRNA methyltransferase YacO (EC 2.1.1.-)
 
Lactobacillus rhamnosus GG

Gene: LGG_02324: TrmH family tRNA/rRNA methyltransferase YacO (EC 2.1.1.-)
TrmH family tRNA/rRNA methyltransferase YacO (EC 2.1.1.-)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD