Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog T-box(Arg) - Lactobacillaceae

Properties
Regulator type: RNA regulatory element
Name: T-box
RFAM: RF00230
Regulation mode:
Biological process: Amino acid metabolism
Effector: Arg-tRNA
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Oenococcus oeni PSU-1
Lactobacillus reuteri JCM 1112 1 1
Lactobacillus helveticus DPC 4571 1 1
Lactobacillus fermentum IFO 3956 1 1
Lactobacillus salivarius subsp. salivarius UCC118 1 1
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
Lactobacillus acidophilus NCFM 1 1
Lactobacillus johnsonii NCC 533 1 1
Lactobacillus plantarum WCFS1 1 1
Lactobacillus casei ATCC 334 1 1
Lactobacillus brevis ATCC 367 2 2
Lactobacillus sakei subsp. sakei 23K 1 1
Pediococcus pentosaceus ATCC 25745 1 1
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 1 1
Lactobacillus rhamnosus GG 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
argS
 
Oenococcus oeni PSU-1

Gene: OEOE_0899: Arginyl-tRNA synthetase (EC 6.1.1.19)
*
Lactobacillus reuteri JCM 1112

Site:
position = -228
score = 63.09
sequence = ATGAAAATAGGATTT...

Gene: LAR_1204: Arginyl-tRNA synthetase (EC 6.1.1.19)
*
Lactobacillus helveticus DPC 4571

Site:
position = -215
score = 63.6
sequence = CCAGTAAGTTAGAAG...

Gene: lhv_1699: Arginyl-tRNA synthetase (EC 6.1.1.19)
*
Lactobacillus fermentum IFO 3956

Site:
position = -228
score = 59.76
sequence = TAATAAAGGCATTCC...

Gene: LAF_1333: Arginyl-tRNA synthetase (EC 6.1.1.19)
*
Lactobacillus salivarius subsp. salivarius UCC118

Site:
position = -215
score = 73.25
sequence = ACTATTCTATGATAG...

Gene: LSL_0677: Arginyl-tRNA synthetase (EC 6.1.1.19)
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Gene: LBUL_0739: Arginyl-tRNA synthetase (EC 6.1.1.19)
*
Lactobacillus acidophilus NCFM

Site:
position = -216
score = 58.65
sequence = CTAGTAAGTTAAAAG...

Gene: LBA1600: Arginyl-tRNA synthetase (EC 6.1.1.19)
*
Lactobacillus johnsonii NCC 533

Site:
position = -214
score = 76.12
sequence = AAAAGGTTAAAAGTA...

Gene: LJ0686: Arginyl-tRNA synthetase (EC 6.1.1.19)
*
Lactobacillus plantarum WCFS1

Site:
position = -226
score = 82.7
sequence = TACGTCTAATGAGAA...

Gene: lp_1391: Arginyl-tRNA synthetase (EC 6.1.1.19)
*
Lactobacillus casei ATCC 334

Site:
position = -218
score = 43.98
sequence = ATAAGGTTCTGTGAG...

Gene: LSEI_1728: Arginyl-tRNA synthetase (EC 6.1.1.19)
*
Lactobacillus brevis ATCC 367

Site:
position = -273
score = 75.2
sequence = TTCACCATCACTGGA...

Gene: LVIS_1491: Arginyl-tRNA synthetase (EC 6.1.1.19)
*
Lactobacillus sakei subsp. sakei 23K

Site:
position = -215
score = 66.8
sequence = GAACAGTCAAAAGAA...

Gene: LSA1421: Arginyl-tRNA synthetase (EC 6.1.1.19)
*
Pediococcus pentosaceus ATCC 25745

Site:
position = -214
score = 71.32
sequence = ATTAGTAGGGTAGTA...

Gene: PEPE_0669: Arginyl-tRNA synthetase (EC 6.1.1.19)
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Site:
position = -300
score = 51.15
sequence = GTAAAAGACGAAGAT...

Gene: LEUM_1215: Arginyl-tRNA synthetase (EC 6.1.1.19)
*
Lactobacillus rhamnosus GG

Site:
position = -216
score = 47.45
sequence = TATAGATCCGGTGAG...

Gene: LGG_01786: Arginyl-tRNA synthetase (EC 6.1.1.19)
Arginyl-tRNA synthetase (EC 6.1.1.19)
 
CRON 2.
oppA
 
Oenococcus oeni PSU-1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1
 
Lactobacillus casei ATCC 334
*
Lactobacillus brevis ATCC 367

Site:
position = -276
score = 100.98
sequence = AAACGACGTTGCCCA...

Gene: LVIS_0024: ABC-type oligopeptide transport system, periplasmic component
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Lactobacillus rhamnosus GG
ABC-type oligopeptide transport system, periplasmic component
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD