Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog T-box(Asn) - Lactobacillaceae

Properties
Regulator type: RNA regulatory element
Name: T-box
RFAM: RF00230
Regulation mode:
Biological process: Amino acid metabolism
Effector: Asn-tRNA
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Oenococcus oeni PSU-1
Lactobacillus reuteri JCM 1112 2 1
Lactobacillus helveticus DPC 4571 5 2
Lactobacillus fermentum IFO 3956 1 1
Lactobacillus salivarius subsp. salivarius UCC118
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 2 1
Lactobacillus acidophilus NCFM 5 2
Lactobacillus johnsonii NCC 533 1 1
Lactobacillus plantarum WCFS1 2 1
Lactobacillus casei ATCC 334
Lactobacillus brevis ATCC 367 2 2
Lactobacillus sakei subsp. sakei 23K
Pediococcus pentosaceus ATCC 25745 2 2
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
Lactobacillus rhamnosus GG
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
asnA
 
Oenococcus oeni PSU-1
*
Lactobacillus reuteri JCM 1112

Site:
position = -308
score = 123.03
sequence = GAAAAGCGATGAGAA...

Gene: LAR_1767: Aspartate--ammonia ligase (EC 6.3.1.1)
*
Lactobacillus helveticus DPC 4571

Site:
position = -310
score = 116.33
sequence = AAAAAGCTATGAAAA...

Gene: lhv_2034: Aspartate--ammonia ligase (EC 6.3.1.1)
 
Lactobacillus fermentum IFO 3956

Gene: LAF_1602: Aspartate--ammonia ligase (EC 6.3.1.1)
 
Lactobacillus salivarius subsp. salivarius UCC118

Gene: LSL_1033: Aspartate--ammonia ligase (EC 6.3.1.1)
*
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Site:
position = -303
score = 91.69
sequence = GTCAAAAGATGAGAA...

Gene: LBUL_1110: Aspartate--ammonia ligase (EC 6.3.1.1)
*
Lactobacillus acidophilus NCFM

Site:
position = -310
score = 116.83
sequence = AAAAAGCTATGAAAA...

Gene: LBA1896: Aspartate--ammonia ligase (EC 6.3.1.1)
*
Lactobacillus johnsonii NCC 533

Site:
position = -302
score = 98.19
sequence = AAAAAGCAATGAAGA...

Gene: LJ0511: Aspartate--ammonia ligase (EC 6.3.1.1)
*
Lactobacillus plantarum WCFS1

Site:
position = -330
score = 91.07
sequence = ATAAAAAACGGAGGA...

Gene: lp_0957: Aspartate--ammonia ligase (EC 6.3.1.1)
 
Lactobacillus casei ATCC 334
*
Lactobacillus brevis ATCC 367

Site:
position = -308
score = 82.99
sequence = AAAAAACGGAGGAAA...

Gene: LVIS_1649: Aspartate--ammonia ligase (EC 6.3.1.1)
 
Lactobacillus sakei subsp. sakei 23K
*
Pediococcus pentosaceus ATCC 25745

Site:
position = -309
score = 88.14
sequence = TGAAGACAAAAAGAG...

Gene: PEPE_1469: Aspartate--ammonia ligase (EC 6.3.1.1)
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Lactobacillus rhamnosus GG
Aspartate--ammonia ligase (EC 6.3.1.1)
asnS
 
Oenococcus oeni PSU-1

Gene: OEOE_1097: Asparaginyl-tRNA synthetase (EC 6.1.1.22)
 
Lactobacillus reuteri JCM 1112

Gene: LAR_1768: Asparaginyl-tRNA synthetase (EC 6.1.1.22)
 
Lactobacillus helveticus DPC 4571

Gene: lhv_1270: Asparaginyl-tRNA synthetase (EC 6.1.1.22)
 
Lactobacillus fermentum IFO 3956

Gene: LAF_1189: Asparaginyl-tRNA synthetase (EC 6.1.1.22)
 
Lactobacillus salivarius subsp. salivarius UCC118

Gene: LSL_0689: Asparaginyl-tRNA synthetase (EC 6.1.1.22)
 2
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Gene: LBUL_1111: Asparaginyl-tRNA synthetase (EC 6.1.1.22)

Gene: LBUL_0911: Asparaginyl-tRNA synthetase (EC 6.1.1.22)
 
Lactobacillus acidophilus NCFM

Gene: LBA1162: Asparaginyl-tRNA synthetase (EC 6.1.1.22)
 
Lactobacillus johnsonii NCC 533

Gene: LJ1200: Asparaginyl-tRNA synthetase (EC 6.1.1.22)
 2
Lactobacillus plantarum WCFS1

Gene: lp_0956: Asparaginyl-tRNA synthetase (EC 6.1.1.22)

Gene: lp_1740: Asparaginyl-tRNA synthetase (EC 6.1.1.22)
 
Lactobacillus casei ATCC 334

Gene: LSEI_1485: Asparaginyl-tRNA synthetase (EC 6.1.1.22)
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K

Gene: LSA0914: Asparaginyl-tRNA synthetase (EC 6.1.1.22)
 
Pediococcus pentosaceus ATCC 25745
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_1381: Asparaginyl-tRNA synthetase (EC 6.1.1.22)
 
Lactobacillus rhamnosus GG

Gene: LGG_01491: Asparaginyl-tRNA synthetase (EC 6.1.1.22)
Asparaginyl-tRNA synthetase (EC 6.1.1.22)
 
CRON 2.
asnS2
 
Oenococcus oeni PSU-1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1
 
Lactobacillus casei ATCC 334
*
Lactobacillus brevis ATCC 367

Site:
position = -303
score = 70.95
sequence = ACAAAAACAAGAGAA...

Gene: LVIS_2017: Asparaginyl-tRNA synthetase (EC 6.1.1.22)
 
Lactobacillus sakei subsp. sakei 23K
*
Pediococcus pentosaceus ATCC 25745

Site:
position = -302
score = 103.3
sequence = TATCAACCGTAAGAA...

Gene: PEPE_0547: Asparaginyl-tRNA synthetase (EC 6.1.1.22)
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Lactobacillus rhamnosus GG
Asparaginyl-tRNA synthetase (EC 6.1.1.22)
 
CRON 3.
asnB
 
Oenococcus oeni PSU-1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571
*
Lactobacillus fermentum IFO 3956

Site:
position = -314
score = 110.33
sequence = TAAGAGAAAAATGAG...

Gene: LAF_0646: Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1
 
Lactobacillus casei ATCC 334
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Lactobacillus rhamnosus GG
Asparagine synthetase [glutamine-hydrolyzing] (EC 6.3.5.4)
 
CRON 4.
glnQ
 
Oenococcus oeni PSU-1
 
Lactobacillus reuteri JCM 1112
*
Lactobacillus helveticus DPC 4571

Site:
position = -496
score = 104.9
sequence = AAAAGGCTATGAAAA...

Gene: lhv_0598: Glutamine transport ATP-binding protein GlnQ (TC 3.A.1.3.2)
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
*
Lactobacillus acidophilus NCFM

Site:
position = -478
score = 113.36
sequence = AAAAAGCGATGAAAA...

Gene: LBA0578: Glutamine transport ATP-binding protein GlnQ (TC 3.A.1.3.2)
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1
 
Lactobacillus casei ATCC 334
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Lactobacillus rhamnosus GG
Glutamine transport ATP-binding protein GlnQ (TC 3.A.1.3.2)
glnH
 
Oenococcus oeni PSU-1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571

Gene: lhv_0599: Glutamine ABC transporter, periplasmic glutamine-binding protein (TC 3.A.1.3.2)
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM

Gene: LBA0579: Glutamine ABC transporter, periplasmic glutamine-binding protein (TC 3.A.1.3.2)
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1
 
Lactobacillus casei ATCC 334
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Lactobacillus rhamnosus GG
Glutamine ABC transporter, periplasmic glutamine-binding protein (TC 3.A.1.3.2)
glnM
 
Oenococcus oeni PSU-1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571

Gene: lhv_0600: Glutamine transport system permease protein GlnP (TC 3.A.1.3.2)
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM

Gene: LBA0581: Glutamine transport system permease protein GlnP (TC 3.A.1.3.2)
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1
 
Lactobacillus casei ATCC 334
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Lactobacillus rhamnosus GG
Glutamine transport system permease protein GlnP (TC 3.A.1.3.2)
glnP
 
Oenococcus oeni PSU-1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571

Gene: lhv_0601: Glutamine transport system permease protein GlnP (TC 3.A.1.3.2)
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM

Gene: LBA0582: Glutamine transport system permease protein GlnP (TC 3.A.1.3.2)
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1
 
Lactobacillus casei ATCC 334
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Lactobacillus rhamnosus GG
Glutamine transport system permease protein GlnP (TC 3.A.1.3.2)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD