Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog T-box(Ala) - Lactobacillaceae

Properties
Regulator type: RNA regulatory element
Name: T-box
RFAM: RF00230
Regulation mode:
Biological process: Amino acid metabolism
Effector: Ala-tRNA
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Oenococcus oeni PSU-1 1 1
Lactobacillus reuteri JCM 1112 1 1
Lactobacillus helveticus DPC 4571 1 1
Lactobacillus fermentum IFO 3956 1 1
Lactobacillus salivarius subsp. salivarius UCC118 1 1
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 1 1
Lactobacillus acidophilus NCFM 1 1
Lactobacillus johnsonii NCC 533 1 1
Lactobacillus plantarum WCFS1 1 1
Lactobacillus casei ATCC 334 1 1
Lactobacillus brevis ATCC 367 1 1
Lactobacillus sakei subsp. sakei 23K 1 1
Pediococcus pentosaceus ATCC 25745 1 1
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 1 1
Lactobacillus rhamnosus GG 2 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
LGG_00766
 
Oenococcus oeni PSU-1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1
 
Lactobacillus casei ATCC 334
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
*
Lactobacillus rhamnosus GG

Site:
position = -138
score = 36.94
sequence = GAAAAGCTATAATTG...

Gene: LGG_00766: predicted ORF
predicted ORF
alaS
*
Oenococcus oeni PSU-1

Site:
position = -195
score = 61.54
sequence = GAATAGAAAACGGAT...

Gene: OEOE_1167: Alanyl-tRNA synthetase (EC 6.1.1.7)
*
Lactobacillus reuteri JCM 1112

Site:
position = -233
score = 43.14
sequence = AATATGACACGTCTG...

Gene: LAR_0519: Alanyl-tRNA synthetase (EC 6.1.1.7)
*
Lactobacillus helveticus DPC 4571

Site:
position = -209
score = 56.23
sequence = TTCAGCTTAAGATAT...

Gene: lhv_0438: Alanyl-tRNA synthetase (EC 6.1.1.7)
*
Lactobacillus fermentum IFO 3956

Site:
position = -224
score = 44.78
sequence = ACACATCTGGGACAT...

Gene: LAF_0521: Alanyl-tRNA synthetase (EC 6.1.1.7)
*
Lactobacillus salivarius subsp. salivarius UCC118

Site:
position = -242
score = 64.92
sequence = TACTTTGACTTGAAT...

Gene: LSL_1111: Alanyl-tRNA synthetase (EC 6.1.1.7)
*
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Site:
position = -213
score = 49.44
sequence = AGAGACGCTTAAGAT...

Gene: LBUL_1486: Alanyl-tRNA synthetase (EC 6.1.1.7)
*
Lactobacillus acidophilus NCFM

Site:
position = -213
score = 55.33
sequence = TTCAGCTTAAGATAT...

Gene: LBA0417: Alanyl-tRNA synthetase (EC 6.1.1.7)
*
Lactobacillus johnsonii NCC 533

Site:
position = -211
score = 62.14
sequence = GCACGTTTAGGACAT...

Gene: LJ0474: Alanyl-tRNA synthetase (EC 6.1.1.7)
*
Lactobacillus plantarum WCFS1

Site:
position = -262
score = 60.16
sequence = TTTCTATACTTTGCA...

Gene: lp_2277: Alanyl-tRNA synthetase (EC 6.1.1.7)
*
Lactobacillus casei ATCC 334

Site:
position = -377
score = 32.53
sequence = GAAAAGCTATAATGA...

Gene: LSEI_0784: Alanyl-tRNA synthetase (EC 6.1.1.7)
*
Lactobacillus brevis ATCC 367

Site:
position = -237
score = 54.88
sequence = TATTTCAATAATATA...

Gene: LVIS_1223: Alanyl-tRNA synthetase (EC 6.1.1.7)
*
Lactobacillus sakei subsp. sakei 23K

Site:
position = -190
score = 32.42
sequence = TCATTAGAACGACAG...

Gene: LSA0387: Alanyl-tRNA synthetase (EC 6.1.1.7)
*
Pediococcus pentosaceus ATCC 25745

Site:
position = -228
score = 62.76
sequence = AAAATCATTTGAGAT...

Gene: PEPE_1263: Alanyl-tRNA synthetase (EC 6.1.1.7)
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Site:
position = -249
score = 52.04
sequence = TAATGATTAGGAATT...

Gene: LEUM_0556: Alanyl-tRNA synthetase (EC 6.1.1.7)
 
Lactobacillus rhamnosus GG

Gene: LGG_00767: Alanyl-tRNA synthetase (EC 6.1.1.7)
Alanyl-tRNA synthetase (EC 6.1.1.7)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD