Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog preQ1-II - Lactobacillaceae

Properties
Regulator type: RNA regulatory element
Name: preQ1-II
RFAM: RF01054
Regulation mode:
Biological process: Queuosine biosynthesis
Effector: Pre-queuosine
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Oenococcus oeni PSU-1
Lactobacillus reuteri JCM 1112
Lactobacillus helveticus DPC 4571
Lactobacillus fermentum IFO 3956
Lactobacillus salivarius subsp. salivarius UCC118
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
Lactobacillus acidophilus NCFM
Lactobacillus johnsonii NCC 533
Lactobacillus plantarum WCFS1
Lactobacillus casei ATCC 334 1 1
Lactobacillus brevis ATCC 367
Lactobacillus sakei subsp. sakei 23K
Pediococcus pentosaceus ATCC 25745 1 1
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
Lactobacillus rhamnosus GG 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
queT
 
Oenococcus oeni PSU-1

Gene: OEOE_0124: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus salivarius subsp. salivarius UCC118

Gene: LSL_1470: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1
*
Lactobacillus casei ATCC 334

Site:
position = -97
score = 56.57
sequence = AACACCAAAACTGAA...

Gene: LSEI_2056: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K
*2
Pediococcus pentosaceus ATCC 25745

Site:
position = -112
score = 15.01
sequence = ATGATAGAATTCTGT...

Gene: PEPE_1764: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter

Gene: PEPE_0901: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_1240: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter
*
Lactobacillus rhamnosus GG

Site:
position = -125
score = 44.56
sequence = GAAAAGTAAACTGGA...

Gene: LGG_02057: Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter
Substrate-specific component QueT (COG4708) of predicted queuosine-regulated ECF transporter
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD