Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog S15 - Lactobacillaceae

Properties
Regulator type: RNA regulatory element
Name: S15
RFAM: RF00114
Regulation mode:
Biological process: Ribosome biogenesis
Effector:
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Oenococcus oeni PSU-1 1 1
Lactobacillus reuteri JCM 1112 1 1
Lactobacillus helveticus DPC 4571
Lactobacillus fermentum IFO 3956
Lactobacillus salivarius subsp. salivarius UCC118 1 1
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 1 1
Lactobacillus acidophilus NCFM
Lactobacillus johnsonii NCC 533 1 1
Lactobacillus plantarum WCFS1
Lactobacillus casei ATCC 334
Lactobacillus brevis ATCC 367 1 1
Lactobacillus sakei subsp. sakei 23K 1 1
Pediococcus pentosaceus ATCC 25745 1 1
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 1 1
Lactobacillus rhamnosus GG
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
rpsO
*
Oenococcus oeni PSU-1

Site:
position = -62
score = 22.83
sequence = CTTTTCGCGAACCTA...

Gene: OEOE_1283: SSU ribosomal protein S15p (S13e)
*
Lactobacillus reuteri JCM 1112

Site:
position = -75
score = 15.92
sequence = TTCTCAGTTTAACGA...

Gene: LAR_0625: SSU ribosomal protein S15p (S13e)
 
Lactobacillus helveticus DPC 4571

Gene: lhv_0892: SSU ribosomal protein S15p (S13e)
 
Lactobacillus fermentum IFO 3956

Gene: LAF_0614: SSU ribosomal protein S15p (S13e)
*
Lactobacillus salivarius subsp. salivarius UCC118

Site:
position = -75
score = 14.55
sequence = CTTTTTACTGAGTTT...

Gene: LSL_0638: SSU ribosomal protein S15p (S13e)
*
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Site:
position = -82
score = 14.07
sequence = GTGAACCCCGGACGT...

Gene: LBUL_0706: SSU ribosomal protein S15p (S13e)
 
Lactobacillus acidophilus NCFM

Gene: LBA0842: SSU ribosomal protein S15p (S13e)
*
Lactobacillus johnsonii NCC 533

Site:
position = -73
score = 23.24
sequence = ATTGACGCTGTTTTC...

Gene: LJ1006: SSU ribosomal protein S15p (S13e)
 
Lactobacillus plantarum WCFS1

Gene: lp_2125: SSU ribosomal protein S15p (S13e)
 
Lactobacillus casei ATCC 334

Gene: LSEI_1328: SSU ribosomal protein S15p (S13e)
*
Lactobacillus brevis ATCC 367

Site:
position = -53
score = 13.85
sequence = CACCGCCGGCTTACT...

Gene: LVIS_1392: SSU ribosomal protein S15p (S13e)
*
Lactobacillus sakei subsp. sakei 23K

Site:
position = -70
score = 18.73
sequence = TCTGTTTAGCGACGT...

Gene: LSA1066: SSU ribosomal protein S15p (S13e)
*
Pediococcus pentosaceus ATCC 25745

Site:
position = -54
score = 25.61
sequence = ATCTGCCGACGATTT...

Gene: PEPE_1146: SSU ribosomal protein S15p (S13e)
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Site:
position = -65
score = 17.04
sequence = TTGTTGAGCGGCTCA...

Gene: LEUM_1582: SSU ribosomal protein S15p (S13e)
 
Lactobacillus rhamnosus GG

Gene: LGG_01338: SSU ribosomal protein S15p (S13e)
SSU ribosomal protein S15p (S13e)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
Export
Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD