Regulog S15 - Lactobacillaceae
| Regulator type: | RNA regulatory element |
| Name: | S15 |
| RFAM: | RF00114 |
| Regulation mode: | |
| Biological process: | Ribosome biogenesis |
| Effector: | |
| Phylum: | Firmicutes |
Member of regulog collections
- By taxonomy - Lactobacillaceae
- By RNA motif - S15
- By pathway - Ribosome biogenesis
| Genome | Genes | Operons |
|---|---|---|
| Oenococcus oeni PSU-1 | 1 | 1 |
| Lactobacillus reuteri JCM 1112 | 1 | 1 |
| Lactobacillus helveticus DPC 4571 | ||
| Lactobacillus fermentum IFO 3956 | ||
| Lactobacillus salivarius subsp. salivarius UCC118 | 1 | 1 |
| Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 | 1 | 1 |
| Lactobacillus acidophilus NCFM | ||
| Lactobacillus johnsonii NCC 533 | 1 | 1 |
| Lactobacillus plantarum WCFS1 | ||
| Lactobacillus casei ATCC 334 | ||
| Lactobacillus brevis ATCC 367 | 1 | 1 |
| Lactobacillus sakei subsp. sakei 23K | 1 | 1 |
| Pediococcus pentosaceus ATCC 25745 | 1 | 1 |
| Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 | 1 | 1 |
| Lactobacillus rhamnosus GG |
| Genes | Function | |||||||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|---|
| CRON 1. | ||||||||||||||||
| rpsO |
*
Oenococcus oeni PSU-1 Site: position = -62 score = 22.83 sequence = CTTTTCGCGAACCTA... Gene: OEOE_1283: SSU ribosomal protein S15p (S13e) |
*
Lactobacillus reuteri JCM 1112 Site: position = -75 score = 15.92 sequence = TTCTCAGTTTAACGA... Gene: LAR_0625: SSU ribosomal protein S15p (S13e) |
Gene: lhv_0892: SSU ribosomal protein S15p (S13e) |
Gene: LAF_0614: SSU ribosomal protein S15p (S13e) |
*
Lactobacillus salivarius subsp. salivarius UCC118 Site: position = -75 score = 14.55 sequence = CTTTTTACTGAGTTT... Gene: LSL_0638: SSU ribosomal protein S15p (S13e) |
*
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 Site: position = -82 score = 14.07 sequence = GTGAACCCCGGACGT... Gene: LBUL_0706: SSU ribosomal protein S15p (S13e) |
Gene: LBA0842: SSU ribosomal protein S15p (S13e) |
*
Lactobacillus johnsonii NCC 533 Site: position = -73 score = 23.24 sequence = ATTGACGCTGTTTTC... Gene: LJ1006: SSU ribosomal protein S15p (S13e) |
Gene: lp_2125: SSU ribosomal protein S15p (S13e) |
Gene: LSEI_1328: SSU ribosomal protein S15p (S13e) |
*
Lactobacillus brevis ATCC 367 Site: position = -53 score = 13.85 sequence = CACCGCCGGCTTACT... Gene: LVIS_1392: SSU ribosomal protein S15p (S13e) |
*
Lactobacillus sakei subsp. sakei 23K Site: position = -70 score = 18.73 sequence = TCTGTTTAGCGACGT... Gene: LSA1066: SSU ribosomal protein S15p (S13e) |
*
Pediococcus pentosaceus ATCC 25745 Site: position = -54 score = 25.61 sequence = ATCTGCCGACGATTT... Gene: PEPE_1146: SSU ribosomal protein S15p (S13e) |
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 Site: position = -65 score = 17.04 sequence = TTGTTGAGCGGCTCA... Gene: LEUM_1582: SSU ribosomal protein S15p (S13e) |
Gene: LGG_01338: SSU ribosomal protein S15p (S13e) |
SSU ribosomal protein S15p (S13e) |
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
|
Regulated Genes | [ Tab delimited format ] | DOWNLOAD |
|
Regulatory Sites | [ FASTA format ] | DOWNLOAD |