Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog Purine - Lactobacillaceae

Properties
Regulator type: RNA regulatory element
Name: Purine
RFAM: RF00167
Regulation mode:
Biological process: Purine metabolism
Effector: Adenine; Guanine
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Oenococcus oeni PSU-1 3 2
Lactobacillus reuteri JCM 1112 1 1
Lactobacillus helveticus DPC 4571 3 2
Lactobacillus fermentum IFO 3956 1 1
Lactobacillus salivarius subsp. salivarius UCC118 2 1
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 2 1
Lactobacillus acidophilus NCFM 4 2
Lactobacillus johnsonii NCC 533 3 2
Lactobacillus plantarum WCFS1 2 2
Lactobacillus casei ATCC 334
Lactobacillus brevis ATCC 367 1 1
Lactobacillus sakei subsp. sakei 23K
Pediococcus pentosaceus ATCC 25745 1 1
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 2 2
Lactobacillus rhamnosus GG
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
pbuO
 
Oenococcus oeni PSU-1

Gene: OEOE_1119: Xanthine/uracil/thiamine/ascorbate permease family protein
 
Lactobacillus reuteri JCM 1112
*
Lactobacillus helveticus DPC 4571

Site:
position = -182
score = 51.49
sequence = AATACGACTAACGTG...

Gene: lhv_2093: Xanthine/uracil/thiamine/ascorbate permease family protein
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
*2
Lactobacillus acidophilus NCFM

Site:
position = -174
score = 57.84
sequence = TACTTAACAATCAAG...

Gene: LBA1959: Xanthine/uracil/thiamine/ascorbate permease family protein

Gene: LBA1960: Xanthine/uracil/thiamine/ascorbate permease family protein
*
Lactobacillus johnsonii NCC 533

Site:
position = -178
score = 57.45
sequence = TACTTAACAATCAAG...

Gene: LJ1830: Xanthine/uracil/thiamine/ascorbate permease family protein
 
Lactobacillus plantarum WCFS1
 
Lactobacillus casei ATCC 334

Gene: LSEI_0151: Xanthine/uracil/thiamine/ascorbate permease family protein
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Site:
position = -185
score = 25.29
sequence = ATTCTATGTGAAATT...

Gene: LEUM_0414: Xanthine/uracil/thiamine/ascorbate permease family protein
 
Lactobacillus rhamnosus GG

Gene: LGG_00168: Xanthine/uracil/thiamine/ascorbate permease family protein
Xanthine/uracil/thiamine/ascorbate permease family protein
 
CRON 2.
adeC
 
Oenococcus oeni PSU-1

Gene: OEOE_0158: Adenine deaminase
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
*
Lactobacillus plantarum WCFS1

Site:
position = -177
score = 70.29
sequence = TTTATCAATACAACT...

Gene: lp_3334: Adenine deaminase
 
Lactobacillus casei ATCC 334
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_0683: Adenine deaminase
 
Lactobacillus rhamnosus GG
Adenine deaminase
 
CRON 3.
guaB
*
Oenococcus oeni PSU-1

Site:
position = -161
score = 45.11
sequence = TAAGATAAATAGCAA...

Gene: OEOE_1127: Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205)
 
Lactobacillus reuteri JCM 1112

Gene: LAR_0110: Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205)
 2
Lactobacillus helveticus DPC 4571

Gene: lhv_0569: Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205)

Gene: lhv_0216: Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205)
 
Lactobacillus fermentum IFO 3956

Gene: LAF_0081: Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205)
 
Lactobacillus salivarius subsp. salivarius UCC118

Gene: LSL_1452: Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205)
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Gene: LBUL_0251: Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205)
 
Lactobacillus acidophilus NCFM

Gene: LBA0199: Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205)
 
Lactobacillus johnsonii NCC 533

Gene: LJ0043: Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205)
 
Lactobacillus plantarum WCFS1
 
Lactobacillus casei ATCC 334
 
Lactobacillus brevis ATCC 367

Gene: LVIS_2058: Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205)
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_1719: Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205)
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Site:
position = -319
score = 50.99
sequence = AACTAAAGAAGTTAT...

Gene: LEUM_0645: Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205)
 
Lactobacillus rhamnosus GG
Inosine-5'-monophosphate dehydrogenase (EC 1.1.1.205)
 
CRON 4.
xpt
*
Oenococcus oeni PSU-1

Site:
position = -136
score = 57.59
sequence = AATTCAGAATGTTGA...

Gene: OEOE_0537: Xanthine phosphoribosyltransferase (EC 2.4.2.22)
 
Lactobacillus reuteri JCM 1112

Gene: LAR_1358: Xanthine phosphoribosyltransferase (EC 2.4.2.22)
*
Lactobacillus helveticus DPC 4571

Site:
position = -207
score = 51.38
sequence = AGATTGAACCAACAA...

Gene: lhv_0253: Xanthine phosphoribosyltransferase (EC 2.4.2.22)
 
Lactobacillus fermentum IFO 3956

Gene: LAF_1478: Xanthine phosphoribosyltransferase (EC 2.4.2.22)
*
Lactobacillus salivarius subsp. salivarius UCC118

Site:
position = -166
score = 59.52
sequence = ATGTTATCTTTAAAT...

Gene: LSL_1309: Xanthine phosphoribosyltransferase (EC 2.4.2.22)
*
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Site:
position = -166
score = 59.08
sequence = TAACTTAACAAATGT...

Gene: LBUL_0250: Xanthine phosphoribosyltransferase (EC 2.4.2.22)
*
Lactobacillus acidophilus NCFM

Site:
position = -174
score = 63.31
sequence = AGATTAAGCCAATAC...

Gene: LBA0240: Xanthine phosphoribosyltransferase (EC 2.4.2.22)
*
Lactobacillus johnsonii NCC 533

Site:
position = -170
score = 50.24
sequence = TACACTCTAGATATC...

Gene: LJ0227: Xanthine phosphoribosyltransferase (EC 2.4.2.22)
 
Lactobacillus plantarum WCFS1

Gene: lp_1139: Xanthine phosphoribosyltransferase (EC 2.4.2.22)
 
Lactobacillus casei ATCC 334

Gene: LSEI_1117: Xanthine phosphoribosyltransferase (EC 2.4.2.22)
 
Lactobacillus brevis ATCC 367

Gene: LVIS_1636: Xanthine phosphoribosyltransferase (EC 2.4.2.22)
 
Lactobacillus sakei subsp. sakei 23K

Gene: LSA1557: Xanthine phosphoribosyltransferase (EC 2.4.2.22)
 
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_1374: Xanthine phosphoribosyltransferase (EC 2.4.2.22)
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_2059: Xanthine phosphoribosyltransferase (EC 2.4.2.22)
 
Lactobacillus rhamnosus GG

Gene: LGG_01076: Xanthine phosphoribosyltransferase (EC 2.4.2.22)
Xanthine phosphoribosyltransferase (EC 2.4.2.22)
pbuX
 
Oenococcus oeni PSU-1

Gene: OEOE_0536: Xanthine/uracil permease
*
Lactobacillus reuteri JCM 1112

Site:
position = -187
score = 65.34
sequence = ACTACATCAAATAAA...

Gene: LAR_1713: Xanthine/uracil permease
 
Lactobacillus helveticus DPC 4571

Gene: lhv_0252: Xanthine/uracil permease
*
Lactobacillus fermentum IFO 3956

Site:
position = -146
score = 70.06
sequence = ATTTAGAAAACGTAA...

Gene: LAF_1694: Xanthine/uracil permease
 
Lactobacillus salivarius subsp. salivarius UCC118

Gene: LSL_1308: Xanthine/uracil permease
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Gene: LBUL_0249: Xanthine/uracil permease
 
Lactobacillus acidophilus NCFM

Gene: LBA0239: Xanthine/uracil permease
 
Lactobacillus johnsonii NCC 533

Gene: LJ0226: Xanthine/uracil permease
*
Lactobacillus plantarum WCFS1

Site:
position = -157
score = 64.87
sequence = TCAAATAAGTGGTAA...

Gene: lp_2710: Xanthine/uracil permease
 
Lactobacillus casei ATCC 334

Gene: LSEI_1118: Xanthine/uracil permease
*
Lactobacillus brevis ATCC 367

Site:
position = -226
score = 67.62
sequence = AATTAAAATAAGTGA...

Gene: LVIS_1838: Xanthine/uracil permease
 
Lactobacillus sakei subsp. sakei 23K
*
Pediococcus pentosaceus ATCC 25745

Site:
position = -195
score = 57.89
sequence = CAATCAAATAAAACT...

Gene: PEPE_1835: Xanthine/uracil permease
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Lactobacillus rhamnosus GG

Gene: LGG_01077: Xanthine/uracil permease
Xanthine/uracil permease
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulatory Sites [ FASTA format ] DOWNLOAD