Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog PyrR - Lactobacillaceae

Properties
Regulator type: RNA regulatory element
Name: PyrR
RFAM: RF00515
Regulation mode:
Biological process: Pyrimidine metabolism
Effector: PyrR
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Oenococcus oeni PSU-1
Lactobacillus reuteri JCM 1112 10 4
Lactobacillus helveticus DPC 4571 9 4
Lactobacillus fermentum IFO 3956 11 5
Lactobacillus salivarius subsp. salivarius UCC118 8 2
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 8 4
Lactobacillus acidophilus NCFM 9 4
Lactobacillus johnsonii NCC 533 9 4
Lactobacillus plantarum WCFS1 11 4
Lactobacillus casei ATCC 334 9 1
Lactobacillus brevis ATCC 367 6 4
Lactobacillus sakei subsp. sakei 23K 13 4
Pediococcus pentosaceus ATCC 25745 3 3
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 6 1
Lactobacillus rhamnosus GG 10 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
codB
 
Oenococcus oeni PSU-1
*
Lactobacillus reuteri JCM 1112

Site:
position = -140
score = 47.77
sequence = GTTCTTTTAATGTAG...

Gene: LAR_0247: Cytosine/purine/uracil/thiamine/allantoin permease family protein
 
Lactobacillus helveticus DPC 4571
*
Lactobacillus fermentum IFO 3956

Site:
position = -109
score = 49.7
sequence = AAGTCTTTAACGACG...

Gene: LAF_0911: Cytosine/purine/uracil/thiamine/allantoin permease family protein
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1

Gene: lp_3374: Cytosine/purine/uracil/thiamine/allantoin permease family protein
 
Lactobacillus casei ATCC 334
 
Lactobacillus brevis ATCC 367

Gene: LVIS_0417: Cytosine/purine/uracil/thiamine/allantoin permease family protein
*2
Lactobacillus sakei subsp. sakei 23K

Site:
position = -122
score = 56.28
sequence = TAATTCCTTTTAAGT...

Gene: LSA1211: Cytosine/purine/uracil/thiamine/allantoin permease family protein

Gene: LSA1210: Cytosine/purine/uracil/thiamine/allantoin permease family protein
 
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_0240: Cytosine/purine/uracil/thiamine/allantoin permease family protein
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Lactobacillus rhamnosus GG
Cytosine/purine/uracil/thiamine/allantoin permease family protein
codA
 
Oenococcus oeni PSU-1
 
Lactobacillus reuteri JCM 1112

Gene: LAR_0248: Cytosine deaminase (EC 3.5.4.1)
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus fermentum IFO 3956

Gene: LAF_0912: Cytosine deaminase (EC 3.5.4.1)
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1
 
Lactobacillus casei ATCC 334
 
Lactobacillus brevis ATCC 367

Gene: LVIS_1932: Cytosine deaminase (EC 3.5.4.1)
 2
Lactobacillus sakei subsp. sakei 23K

Gene: LSA1212: Cytosine deaminase (EC 3.5.4.1)

Gene: LSA1213: Cytosine deaminase (EC 3.5.4.1)
 
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_0241: Cytosine deaminase (EC 3.5.4.1)
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Lactobacillus rhamnosus GG
Cytosine deaminase (EC 3.5.4.1)
ntd
 
Oenococcus oeni PSU-1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1

Gene: lp_1427: Purine trans deoxyribosylase (Nucleoside deoxyribosyltransferase-I) (EC 2.4.2.6)
 
Lactobacillus casei ATCC 334
*
Lactobacillus brevis ATCC 367

Site:
position = -146
score = 51.22
sequence = AGTCCTTTTAAATTA...

Gene: LVIS_0416: Purine trans deoxyribosylase (Nucleoside deoxyribosyltransferase-I) (EC 2.4.2.6)
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_0444: Purine trans deoxyribosylase (Nucleoside deoxyribosyltransferase-I) (EC 2.4.2.6)
 
Lactobacillus rhamnosus GG
Purine trans deoxyribosylase (Nucleoside deoxyribosyltransferase-I) (EC 2.4.2.6)
 
CRON 2.
pyrR
 
Oenococcus oeni PSU-1
 
Lactobacillus reuteri JCM 1112

Gene: LAR_0068: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR
*2
Lactobacillus helveticus DPC 4571

Site:
position = -142
score = 56.73
sequence = GATGCCCTTTAAAGT...

Gene: lhv_0582: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR

Site:
position = -124
score = 56.45
sequence = AATGTCCTTTAAAAT...

Gene: lhv_1447: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR
*
Lactobacillus fermentum IFO 3956

Site:
position = -106
score = 30.79
sequence = ATGCCTTTAAGTGGA...

Gene: LAF_0046: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR
*
Lactobacillus salivarius subsp. salivarius UCC118

Site:
position = -176
score = 39.38
sequence = AGTCCTTTAAACTAG...

Gene: LSL_0827: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR
*2
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Site:
position = -116
score = 50.0
sequence = AATGTCCTTTAAAAT...

Gene: LBUL_1954: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR

Gene: LBUL_1518: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR
*2
Lactobacillus acidophilus NCFM

Site:
position = -147
score = 63.05
sequence = GATGACCTTTAAAAT...

Gene: LBA0563: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR

Site:
position = -133
score = 63.48
sequence = AATGTCCTTTAAAAT...

Gene: LBA1383: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR
*2
Lactobacillus johnsonii NCC 533

Gene: LJ1275: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR

Site:
position = -98
score = 61.09
sequence = AATGTCCTTTAAAAT...

Gene: LJ1280: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR
*2
Lactobacillus plantarum WCFS1

Site:
position = -141
score = 59.0
sequence = AAGCACCTTTAACTT...

Gene: lp_2704: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR

Site:
position = -143
score = 25.39
sequence = CGTCCTTTAATCCGG...

Gene: lp_1782: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR
*
Lactobacillus casei ATCC 334

Site:
position = -325
score = 56.83
sequence = AAGCACCTTTAACTA...

Gene: LSEI_1457: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR
 
Lactobacillus brevis ATCC 367

Gene: LVIS_0831: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR
*
Lactobacillus sakei subsp. sakei 23K

Site:
position = -141
score = 63.66
sequence = AAACCTTTAATTTCA...

Gene: LSA0950: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR
 
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_0942: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_1372: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR
*
Lactobacillus rhamnosus GG

Site:
position = -466
score = 60.16
sequence = AAGCACCTTTAACTA...

Gene: LGG_01461: Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR
Uracil phosphoribosyltransferase (EC 2.4.2.9) / Pyrimidine operon regulatory protein PyrR
pyrP
 
Oenococcus oeni PSU-1

Gene: OEOE_0376: Xanthine/uracil permease
*
Lactobacillus reuteri JCM 1112

Site:
position = -94
score = 57.8
sequence = AGACCTTTAATCGGA...

Gene: LAR_0450: Xanthine/uracil permease
 
Lactobacillus helveticus DPC 4571

Gene: lhv_0581: Xanthine/uracil permease
*
Lactobacillus fermentum IFO 3956

Site:
position = -115
score = 43.34
sequence = AGTCCTTTAATGGAA...

Gene: LAF_0434: Xanthine/uracil permease
 
Lactobacillus salivarius subsp. salivarius UCC118

Gene: LSL_0828: Xanthine/uracil permease
*
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Site:
position = -79
score = 41.01
sequence = GAACCTTTAAATTCA...

Gene: LBUL_0487: Xanthine/uracil permease
 
Lactobacillus acidophilus NCFM

Gene: LBA0562: Xanthine/uracil permease
*
Lactobacillus johnsonii NCC 533

Site:
position = -158
score = 55.64
sequence = GATGACCTTTAATAT...

Gene: LJ0709: Xanthine/uracil permease
*
Lactobacillus plantarum WCFS1

Site:
position = -146
score = 59.79
sequence = CAGTTCCTTTAAATT...

Gene: lp_2371: Xanthine/uracil permease
 
Lactobacillus casei ATCC 334

Gene: LSEI_1456: Xanthine/uracil permease
*
Lactobacillus brevis ATCC 367

Site:
position = -128
score = 47.31
sequence = ATAGTCCTTTAATAT...

Gene: LVIS_1729: Xanthine/uracil permease
*
Lactobacillus sakei subsp. sakei 23K

Site:
position = -169
score = 41.02
sequence = GAACCGTTTAATTGT...

Gene: LSA0951: Xanthine/uracil permease
*
Pediococcus pentosaceus ATCC 25745

Site:
position = -145
score = 45.77
sequence = AGAAACCTTAATTTG...

Gene: PEPE_1124: Xanthine/uracil permease
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_1876: Xanthine/uracil permease
 
Lactobacillus rhamnosus GG

Gene: LGG_01460: Xanthine/uracil permease
Xanthine/uracil permease
pyrB
 
Oenococcus oeni PSU-1

Gene: OEOE_0258: Aspartate carbamoyltransferase (EC 2.1.3.2)
*
Lactobacillus reuteri JCM 1112

Site:
position = -292
score = 59.56
sequence = ATACCTTTAACTTAG...

Site:
position = -148
score = 40.0
sequence = CGACCATTTAATTGT...

Gene: LAR_0117: Aspartate carbamoyltransferase (EC 2.1.3.2)
*
Lactobacillus helveticus DPC 4571

Site:
position = -125
score = 46.77
sequence = ATCAACCATTTAATT...

Gene: lhv_1446: Aspartate carbamoyltransferase (EC 2.1.3.2)
*
Lactobacillus fermentum IFO 3956

Site:
position = -269
score = 59.04
sequence = GATGTCCTTTAAGCT...

Site:
position = -146
score = 38.41
sequence = ATAAACCATCAAATT...

Gene: LAF_1205: Aspartate carbamoyltransferase (EC 2.1.3.2)
*
Lactobacillus salivarius subsp. salivarius UCC118

Site:
position = -303
score = 48.27
sequence = AAACCTTTAAGAATA...

Site:
position = -135
score = 37.74
sequence = AAACCATTTAATTGT...

Gene: LSL_0190: Aspartate carbamoyltransferase (EC 2.1.3.2)
*
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Site:
position = -125
score = 46.77
sequence = ATCAACCATTTAATT...

Gene: LBUL_1953: Aspartate carbamoyltransferase (EC 2.1.3.2)
*
Lactobacillus acidophilus NCFM

Site:
position = -123
score = 40.14
sequence = CCCAACCATTTAATT...

Gene: LBA1382: Aspartate carbamoyltransferase (EC 2.1.3.2)
*
Lactobacillus johnsonii NCC 533

Site:
position = -126
score = 46.52
sequence = GTCAACCATTTAATT...

Gene: LJ1279: Aspartate carbamoyltransferase (EC 2.1.3.2)
*
Lactobacillus plantarum WCFS1

Site:
position = -136
score = 42.7
sequence = TAAAACCATTTAATT...

Gene: lp_2703: Aspartate carbamoyltransferase (EC 2.1.3.2)
 
Lactobacillus casei ATCC 334

Gene: LSEI_1455: Aspartate carbamoyltransferase (EC 2.1.3.2)
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K

Gene: LSA0952: Aspartate carbamoyltransferase (EC 2.1.3.2)
 
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_0313: Aspartate carbamoyltransferase (EC 2.1.3.2)
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Site:
position = -133
score = 60.37
sequence = TAAAACCTTTAATCA...

Gene: LEUM_1210: Aspartate carbamoyltransferase (EC 2.1.3.2)
 
Lactobacillus rhamnosus GG

Gene: LGG_01459: Aspartate carbamoyltransferase (EC 2.1.3.2)
Aspartate carbamoyltransferase (EC 2.1.3.2)
pyrC
 
Oenococcus oeni PSU-1

Gene: OEOE_0259: Dihydroorotase (EC 3.5.2.3)
 
Lactobacillus reuteri JCM 1112

Gene: LAR_0118: Dihydroorotase (EC 3.5.2.3)
 
Lactobacillus helveticus DPC 4571

Gene: lhv_1445: Dihydroorotase (EC 3.5.2.3)
 
Lactobacillus fermentum IFO 3956

Gene: LAF_1204: Dihydroorotase (EC 3.5.2.3)
 
Lactobacillus salivarius subsp. salivarius UCC118

Gene: LSL_0191: Dihydroorotase (EC 3.5.2.3)
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Gene: LBUL_1952: Dihydroorotase (EC 3.5.2.3)
 
Lactobacillus acidophilus NCFM

Gene: LBA1381: Dihydroorotase (EC 3.5.2.3)
 
Lactobacillus johnsonii NCC 533

Gene: LJ1278: Dihydroorotase (EC 3.5.2.3)
 
Lactobacillus plantarum WCFS1

Gene: lp_2702: Dihydroorotase (EC 3.5.2.3)
 
Lactobacillus casei ATCC 334

Gene: LSEI_1454: Dihydroorotase (EC 3.5.2.3)
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K

Gene: LSA0953: Dihydroorotase (EC 3.5.2.3)
 
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_0314: Dihydroorotase (EC 3.5.2.3)
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_1209: Dihydroorotase (EC 3.5.2.3)
 
Lactobacillus rhamnosus GG

Gene: LGG_01458: Dihydroorotase (EC 3.5.2.3)
Dihydroorotase (EC 3.5.2.3)
carA
 
Oenococcus oeni PSU-1

Gene: OEOE_0260: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
*2
Lactobacillus reuteri JCM 1112

Gene: LAR_0876: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)

Site:
position = -198
score = 49.87
sequence = ATTATCCTTTAATTT...

Gene: LAR_0081: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
 2
Lactobacillus helveticus DPC 4571

Gene: lhv_1257: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)

Gene: lhv_1444: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
 2
Lactobacillus fermentum IFO 3956

Gene: LAF_1203: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)

Gene: LAF_1162: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
 2
Lactobacillus salivarius subsp. salivarius UCC118

Gene: LSL_0829: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)

Gene: LSL_0192: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
 2
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Gene: LBUL_1951: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)

Gene: LBUL_0931: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
 2
Lactobacillus acidophilus NCFM

Gene: LBA1150: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)

Gene: LBA1380: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
 2
Lactobacillus johnsonii NCC 533

Gene: LJ1185: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)

Gene: LJ1277: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
 2
Lactobacillus plantarum WCFS1

Gene: lp_2701: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)

Gene: lp_1783: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
 
Lactobacillus casei ATCC 334

Gene: LSEI_1453: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
 
Lactobacillus brevis ATCC 367

Gene: LVIS_0830: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
 
Lactobacillus sakei subsp. sakei 23K

Gene: LSA0954: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
 2
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_0943: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)

Gene: PEPE_0315: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
 2
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_1371: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)

Gene: LEUM_1208: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
 
Lactobacillus rhamnosus GG

Gene: LGG_01457: Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
Carbamoyl-phosphate synthase small chain (EC 6.3.5.5)
carB
 
Oenococcus oeni PSU-1

Gene: OEOE_0261: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
 2
Lactobacillus reuteri JCM 1112

Gene: LAR_0877: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)

Gene: LAR_0080: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
 2
Lactobacillus helveticus DPC 4571

Gene: lhv_1443: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)

Gene: lhv_1256: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
 2
Lactobacillus fermentum IFO 3956

Gene: LAF_1202: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)

Gene: LAF_1161: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
 
Lactobacillus salivarius subsp. salivarius UCC118

Gene: LSL_0193: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
 2
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Gene: LBUL_1950: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)

Gene: LBUL_0932: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
 2
Lactobacillus acidophilus NCFM

Gene: LBA1149: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)

Gene: LBA1379: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
 2
Lactobacillus johnsonii NCC 533

Gene: LJ1184: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)

Gene: LJ1276: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
 
Lactobacillus plantarum WCFS1

Gene: lp_2700: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
 
Lactobacillus casei ATCC 334

Gene: LSEI_1452: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
 
Lactobacillus brevis ATCC 367

Gene: LVIS_0829: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
 
Lactobacillus sakei subsp. sakei 23K

Gene: LSA0955: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
 2
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_0944: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)

Gene: PEPE_0316: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
 2
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_1207: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)

Gene: LEUM_1370: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
 
Lactobacillus rhamnosus GG

Gene: LGG_01456: Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
Carbamoyl-phosphate synthase large chain (EC 6.3.5.5)
pyrD
 
Oenococcus oeni PSU-1

Gene: OEOE_0264: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
 
Lactobacillus reuteri JCM 1112

Gene: LAR_0119: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
 
Lactobacillus helveticus DPC 4571

Gene: lhv_2937: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
 
Lactobacillus fermentum IFO 3956

Gene: LAF_1201: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
 
Lactobacillus salivarius subsp. salivarius UCC118

Gene: LSL_0194: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
 2
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Gene: LBUL_1955: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)

Gene: LBUL_1421: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
 
Lactobacillus acidophilus NCFM

Gene: LBA1384: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
 
Lactobacillus johnsonii NCC 533

Gene: LJ1281: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
 
Lactobacillus plantarum WCFS1

Gene: lp_2699: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
 
Lactobacillus casei ATCC 334

Gene: LSEI_1451: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K

Gene: LSA0957: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
 
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_0317: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Lactobacillus rhamnosus GG

Gene: LGG_01455: Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
Dihydroorotate dehydrogenase, catalytic subunit (EC 1.3.3.1)
pyrF
 
Oenococcus oeni PSU-1

Gene: OEOE_0262: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
 
Lactobacillus reuteri JCM 1112

Gene: LAR_0120: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
*
Lactobacillus helveticus DPC 4571

Site:
position = -118
score = 26.31
sequence = CAAACTTTAAACGGT...

Gene: lhv_2938: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
*
Lactobacillus fermentum IFO 3956

Site:
position = -116
score = 45.39
sequence = TCACCATTTAAGTAA...

Gene: LAF_0047: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
 
Lactobacillus salivarius subsp. salivarius UCC118

Gene: LSL_0830: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
*
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Site:
position = -140
score = 19.19
sequence = TGAGCTTTAATTGGT...

Gene: LBUL_1422: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
*
Lactobacillus acidophilus NCFM

Site:
position = -118
score = 23.15
sequence = CAAACTTTAAACGGT...

Gene: LBA1386: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
*
Lactobacillus johnsonii NCC 533

Site:
position = -115
score = 25.78
sequence = TAAACTTTAAACGGT...

Gene: LJ1282: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
 
Lactobacillus plantarum WCFS1

Gene: lp_2698: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
 
Lactobacillus casei ATCC 334

Gene: LSEI_1450: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
*
Lactobacillus brevis ATCC 367

Site:
position = -129
score = 46.31
sequence = ATCAAACTTTAATTT...

Gene: LVIS_2229: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
 
Lactobacillus sakei subsp. sakei 23K

Gene: LSA0958: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
*
Pediococcus pentosaceus ATCC 25745

Site:
position = -96
score = 27.45
sequence = GAGTCGCTTTAAATC...

Gene: PEPE_1675: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_1206: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
 
Lactobacillus rhamnosus GG

Gene: LGG_01454: Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
Orotidine 5'-phosphate decarboxylase (EC 4.1.1.23)
pyrE
 
Oenococcus oeni PSU-1

Gene: OEOE_0263: Orotate phosphoribosyltransferase (EC 2.4.2.10)
 
Lactobacillus reuteri JCM 1112

Gene: LAR_0121: Orotate phosphoribosyltransferase (EC 2.4.2.10)
 
Lactobacillus helveticus DPC 4571

Gene: lhv_1451: Orotate phosphoribosyltransferase (EC 2.4.2.10)
 
Lactobacillus fermentum IFO 3956

Gene: LAF_0048: Orotate phosphoribosyltransferase (EC 2.4.2.10)
 
Lactobacillus salivarius subsp. salivarius UCC118

Gene: LSL_0831: Orotate phosphoribosyltransferase (EC 2.4.2.10)
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Gene: LBUL_1423: Orotate phosphoribosyltransferase (EC 2.4.2.10)
 
Lactobacillus acidophilus NCFM

Gene: LBA1387: Orotate phosphoribosyltransferase (EC 2.4.2.10)
 
Lactobacillus johnsonii NCC 533

Gene: LJ1283: Orotate phosphoribosyltransferase (EC 2.4.2.10)
 
Lactobacillus plantarum WCFS1

Gene: lp_2697: Orotate phosphoribosyltransferase (EC 2.4.2.10)
 
Lactobacillus casei ATCC 334

Gene: LSEI_1449: Orotate phosphoribosyltransferase (EC 2.4.2.10)
 
Lactobacillus brevis ATCC 367

Gene: LVIS_2228: Orotate phosphoribosyltransferase (EC 2.4.2.10)
 
Lactobacillus sakei subsp. sakei 23K

Gene: LSA0959: Orotate phosphoribosyltransferase (EC 2.4.2.10)
 
Pediococcus pentosaceus ATCC 25745
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_1205: Orotate phosphoribosyltransferase (EC 2.4.2.10)
 
Lactobacillus rhamnosus GG

Gene: LGG_01453: Orotate phosphoribosyltransferase (EC 2.4.2.10)
Orotate phosphoribosyltransferase (EC 2.4.2.10)
pyrK
 
Oenococcus oeni PSU-1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1
 
Lactobacillus casei ATCC 334
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K

Gene: LSA0956: Dihydroorotate oxidase, electron transfer subunit
 
Pediococcus pentosaceus ATCC 25745
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Lactobacillus rhamnosus GG
Dihydroorotate oxidase, electron transfer subunit
 
CRON 3.
pyrG
 
Oenococcus oeni PSU-1

Gene: OEOE_1786: CTP synthase (EC 6.3.4.2)
 
Lactobacillus reuteri JCM 1112

Gene: LAR_0221: CTP synthase (EC 6.3.4.2)
 
Lactobacillus helveticus DPC 4571

Gene: lhv_0247: CTP synthase (EC 6.3.4.2)
 
Lactobacillus fermentum IFO 3956

Gene: LAF_0202: CTP synthase (EC 6.3.4.2)
 
Lactobacillus salivarius subsp. salivarius UCC118

Gene: LSL_0342: CTP synthase (EC 6.3.4.2)
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Gene: LBUL_0309: CTP synthase (EC 6.3.4.2)
 
Lactobacillus acidophilus NCFM

Gene: LBA0233: CTP synthase (EC 6.3.4.2)
 
Lactobacillus johnsonii NCC 533

Gene: LJ0224: CTP synthase (EC 6.3.4.2)
 
Lactobacillus plantarum WCFS1

Gene: lp_0481: CTP synthase (EC 6.3.4.2)
 
Lactobacillus casei ATCC 334

Gene: LSEI_2571: CTP synthase (EC 6.3.4.2)
*
Lactobacillus brevis ATCC 367

Site:
position = -125
score = 17.84
sequence = GCTCCTTGCTACTTG...

Gene: LVIS_0487: CTP synthase (EC 6.3.4.2)
*
Lactobacillus sakei subsp. sakei 23K

Site:
position = -153
score = 19.88
sequence = TATATTCTATGGGCG...

Gene: LSA1629: CTP synthase (EC 6.3.4.2)
*
Pediococcus pentosaceus ATCC 25745

Site:
position = -158
score = 26.26
sequence = GAGATCCTTTTGAGG...

Gene: PEPE_1571: CTP synthase (EC 6.3.4.2)
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_0519: CTP synthase (EC 6.3.4.2)
*
Lactobacillus rhamnosus GG

Site:
position = -118
score = 23.3
sequence = TAATATACATTTTGG...

Gene: LGG_02546: CTP synthase (EC 6.3.4.2)
CTP synthase (EC 6.3.4.2)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD