Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog TPP - Lactobacillaceae

Properties
Regulator type: RNA regulatory element
Name: TPP
RFAM: RF00059
Regulation mode:
Biological process: Thiamine biosynthesis
Effector: Thiamine pyrophosphate
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Oenococcus oeni PSU-1 7 2
Lactobacillus reuteri JCM 1112 7 3
Lactobacillus helveticus DPC 4571
Lactobacillus fermentum IFO 3956 8 3
Lactobacillus salivarius subsp. salivarius UCC118 1 1
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365 3 2
Lactobacillus acidophilus NCFM 1 1
Lactobacillus johnsonii NCC 533 3 1
Lactobacillus plantarum WCFS1 7 2
Lactobacillus casei ATCC 334 9 2
Lactobacillus brevis ATCC 367 7 2
Lactobacillus sakei subsp. sakei 23K 7 3
Pediococcus pentosaceus ATCC 25745 8 3
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293 23 8
Lactobacillus rhamnosus GG 9 2
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
thiT
 
Oenococcus oeni PSU-1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus fermentum IFO 3956
*
Lactobacillus salivarius subsp. salivarius UCC118

Site:
position = -175
score = 65.87
sequence = ACTAGCACAAGGGGA...

Gene: LSL_1668: Core component YuaJ of predicted thiamin ECF transporter
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1
*
Lactobacillus casei ATCC 334

Site:
position = -141
score = 61.38
sequence = AACCTTCACAAAGGG...

Gene: LSEI_1757: Core component YuaJ of predicted thiamin ECF transporter
 
Lactobacillus brevis ATCC 367
*
Lactobacillus sakei subsp. sakei 23K

Site:
position = -146
score = 56.99
sequence = CCATCGCAAAGGGGA...

Gene: LSA0968: Core component YuaJ of predicted thiamin ECF transporter
 
Pediococcus pentosaceus ATCC 25745
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
*
Lactobacillus rhamnosus GG

Site:
position = -140
score = 57.51
sequence = AACCTTCACAAAGGG...

Gene: LGG_01815: Core component YuaJ of predicted thiamin ECF transporter
Core component YuaJ of predicted thiamin ECF transporter
 
CRON 2.
LEUM_0981
 
Oenococcus oeni PSU-1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1
 
Lactobacillus casei ATCC 334
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Site:
position = -176
score = 63.04
sequence = TAAATAACTAGGGGC...

Gene: LEUM_0981: Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase related deacylase
 
Lactobacillus rhamnosus GG
Acetylornithine deacetylase/Succinyl-diaminopimelate desuccinylase related deacylase
LEUM_0982
 
Oenococcus oeni PSU-1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1
 
Lactobacillus casei ATCC 334
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_0982: hypothetical protein
 
Lactobacillus rhamnosus GG
hypothetical protein
 
CRON 3.
thiX
 
Oenococcus oeni PSU-1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1
 
Lactobacillus casei ATCC 334
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K
*
Pediococcus pentosaceus ATCC 25745

Site:
position = -465
score = 55.05
sequence = GATTTTGTAACAGGG...

Gene: PEPE_0333: Hydroxymethylpyrimidine ABC transporter, transmembrane component
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Lactobacillus rhamnosus GG
Hydroxymethylpyrimidine ABC transporter, transmembrane component
thiY
 
Oenococcus oeni PSU-1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1
 
Lactobacillus casei ATCC 334
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_0332: Hydroxymethylpyrimidine ABC transporter, substrate-binding component
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Lactobacillus rhamnosus GG
Hydroxymethylpyrimidine ABC transporter, substrate-binding component
thiZ
 
Oenococcus oeni PSU-1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1
 
Lactobacillus casei ATCC 334
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_0331: Hydroxymethylpyrimidine ABC transporter, ATPase component
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Lactobacillus rhamnosus GG
Hydroxymethylpyrimidine ABC transporter, ATPase component
 
CRON 4.
LEUM_1455
 
Oenococcus oeni PSU-1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1
 
Lactobacillus casei ATCC 334
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Site:
position = -218
score = 64.75
sequence = ATTAACATACTAGGG...

Gene: LEUM_1455: Nucleoside 2-deoxyribosyltransferase
 
Lactobacillus rhamnosus GG
Nucleoside 2-deoxyribosyltransferase
LEUM_1454
 
Oenococcus oeni PSU-1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1
 
Lactobacillus casei ATCC 334
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_1454: Thymidylate synthase
 
Lactobacillus rhamnosus GG
Thymidylate synthase
LEUM_1453
 
Oenococcus oeni PSU-1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1
 
Lactobacillus casei ATCC 334
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_1453: SAM-dependent methyltransferase
 
Lactobacillus rhamnosus GG
SAM-dependent methyltransferase
 
CRON 5.
ykoE
*2
Oenococcus oeni PSU-1

Site:
position = -151
score = 67.31
sequence = ATACTTCTATCTGGG...

Gene: OEOE_0174: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine

Site:
position = -251
score = 65.03
sequence = ACATCAAAATCTGGG...

Gene: OEOE_1491: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
*
Lactobacillus reuteri JCM 1112

Site:
position = -156
score = 71.88
sequence = GAATAAATCTGGGGT...

Gene: LAR_1550: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
 
Lactobacillus helveticus DPC 4571
*2
Lactobacillus fermentum IFO 3956

Site:
position = -168
score = 57.74
sequence = TATCTTGTCTGGGGT...

Gene: LAF_1705: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine

Site:
position = -300
score = 74.27
sequence = CAGAATCTGTCTGGG...

Gene: LAF_1533: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
 
Lactobacillus salivarius subsp. salivarius UCC118
*
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Site:
position = -167
score = 60.93
sequence = AAAGCCACTAGGGGA...

Gene: LBUL_0454: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
*
Lactobacillus acidophilus NCFM

Site:
position = -140
score = 63.01
sequence = TAAGTCACTAGGGGT...

Gene: LBA0576: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
*
Lactobacillus johnsonii NCC 533

Site:
position = -142
score = 59.39
sequence = GTAAATACATCTGGG...

Gene: LJ0074: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
*
Lactobacillus plantarum WCFS1

Site:
position = -197
score = 58.06
sequence = TTCATAGCAACTGGG...

Gene: lp_0219: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
*
Lactobacillus casei ATCC 334

Site:
position = -245
score = 68.22
sequence = AGAAACATTTGGGGT...

Gene: LSEI_0294: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
*
Lactobacillus brevis ATCC 367

Site:
position = -180
score = 58.1
sequence = ACATATGACTGGGGT...

Gene: LVIS_1827: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
*2
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Site:
position = -213
score = 60.46
sequence = AATATTTTATCTGGG...

Gene: LEUM_1545: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine

Site:
position = -409
score = 65.88
sequence = ACACCAAAATCTGGG...

Gene: LEUM_0769: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
*
Lactobacillus rhamnosus GG

Site:
position = -289
score = 71.02
sequence = AGAAACATTTGGGGT...

Gene: LGG_00363: Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Substrate-specific component YkoE of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
ykoD
 2
Oenococcus oeni PSU-1

Gene: OEOE_0173: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine

Gene: OEOE_1489: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
 
Lactobacillus reuteri JCM 1112

Gene: LAR_1551: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
 
Lactobacillus helveticus DPC 4571

Gene: lhv_0104: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
 
Lactobacillus fermentum IFO 3956

Gene: LAF_1706: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
 
Lactobacillus salivarius subsp. salivarius UCC118
*
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Site:
position = -118
score = 37.82
sequence = GACGAATCAACGGGG...

Gene: LBUL_0126: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
 
Lactobacillus acidophilus NCFM

Gene: LBA0094: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
 
Lactobacillus johnsonii NCC 533

Gene: LJ0073: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
 
Lactobacillus plantarum WCFS1

Gene: lp_0218: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
 
Lactobacillus casei ATCC 334

Gene: LSEI_0295: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
 
Lactobacillus brevis ATCC 367

Gene: LVIS_1828: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
 2
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_1544: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine

Gene: LEUM_0767: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
 
Lactobacillus rhamnosus GG

Gene: LGG_00364: Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Duplicated ATPase component YkoD of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
ykoC
 2
Oenococcus oeni PSU-1

Gene: OEOE_0172: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine

Gene: OEOE_1488: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
 
Lactobacillus reuteri JCM 1112

Gene: LAR_1552: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
 
Lactobacillus helveticus DPC 4571

Gene: lhv_0103: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
 
Lactobacillus fermentum IFO 3956

Gene: LAF_1707: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365

Gene: LBUL_0125: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
 
Lactobacillus acidophilus NCFM

Gene: LBA0093: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
 
Lactobacillus johnsonii NCC 533

Gene: LJ0072: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
 
Lactobacillus plantarum WCFS1

Gene: lp_0217: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
 
Lactobacillus casei ATCC 334

Gene: LSEI_0296: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
 
Lactobacillus brevis ATCC 367

Gene: LVIS_1829: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
 2
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_1543: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine

Gene: LEUM_0766: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
 
Lactobacillus rhamnosus GG

Gene: LGG_00365: Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
Transmembrane component YkoC of energizing module of thiamin-regulated ECF transporter for HydroxyMethylPyrimidine
tenA
 
Oenococcus oeni PSU-1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus fermentum IFO 3956

Gene: LAF_0359: Thiaminase II (EC 3.5.99.2)
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1
 
Lactobacillus casei ATCC 334

Gene: LSEI_0297: Thiaminase II (EC 3.5.99.2)
 
Lactobacillus brevis ATCC 367

Gene: LVIS_1830: Thiaminase II (EC 3.5.99.2)
*
Lactobacillus sakei subsp. sakei 23K

Site:
position = -203
score = 60.89
sequence = AATAACGCATCTGGG...

Gene: LSA1095: Thiaminase II (EC 3.5.99.2)
 
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_0561: Thiaminase II (EC 3.5.99.2)
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Site:
position = -176
score = 79.24
sequence = CTGTCCACTAGGGGT...

Gene: LEUM_1546: Thiaminase II (EC 3.5.99.2)
 
Lactobacillus rhamnosus GG

Gene: LGG_00366: Thiaminase II (EC 3.5.99.2)
Thiaminase II (EC 3.5.99.2)
thiW
 
Oenococcus oeni PSU-1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus fermentum IFO 3956

Gene: LAF_1532: Substrate-specific component ThiW of predicted thiazole ECF transporter
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1
 
Lactobacillus casei ATCC 334

Gene: LSEI_0298: Substrate-specific component ThiW of predicted thiazole ECF transporter
 
Lactobacillus brevis ATCC 367

Gene: LVIS_2201: Substrate-specific component ThiW of predicted thiazole ECF transporter
 
Lactobacillus sakei subsp. sakei 23K

Gene: LSA1094: Substrate-specific component ThiW of predicted thiazole ECF transporter
 
Pediococcus pentosaceus ATCC 25745
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_0937: Substrate-specific component ThiW of predicted thiazole ECF transporter
 
Lactobacillus rhamnosus GG

Gene: LGG_00367: Substrate-specific component ThiW of predicted thiazole ECF transporter
Substrate-specific component ThiW of predicted thiazole ECF transporter
thiM
 
Oenococcus oeni PSU-1
*
Lactobacillus reuteri JCM 1112

Site:
position = -162
score = 54.26
sequence = TATTGCATTAGGGGT...

Gene: LAR_0968: Hydroxyethylthiazole kinase (EC 2.7.1.50)
 
Lactobacillus helveticus DPC 4571
*
Lactobacillus fermentum IFO 3956

Site:
position = -282
score = 61.95
sequence = TAATAGTTGCTAGGG...

Gene: LAF_0803: Hydroxyethylthiazole kinase (EC 2.7.1.50)
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
*
Lactobacillus plantarum WCFS1

Site:
position = -183
score = 67.44
sequence = TTAAACACTAGGGGT...

Gene: lp_0113: Hydroxyethylthiazole kinase (EC 2.7.1.50)
 
Lactobacillus casei ATCC 334

Gene: LSEI_0299: Hydroxyethylthiazole kinase (EC 2.7.1.50)
*
Lactobacillus brevis ATCC 367

Site:
position = -334
score = 64.26
sequence = ACCAAAACACTAGGG...

Gene: LVIS_2099: Hydroxyethylthiazole kinase (EC 2.7.1.50)
*
Lactobacillus sakei subsp. sakei 23K

Site:
position = -178
score = 69.43
sequence = CGCTTTGCACTAGGG...

Gene: LSA0059: Hydroxyethylthiazole kinase (EC 2.7.1.50)
*
Pediococcus pentosaceus ATCC 25745

Site:
position = -185
score = 66.6
sequence = ATCTGCACTAGGGGT...

Gene: PEPE_0558: Hydroxyethylthiazole kinase (EC 2.7.1.50)
*2
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_0938: Hydroxyethylthiazole kinase (EC 2.7.1.50)

Site:
position = -234
score = 60.02
sequence = ATAAATATCTGGGGT...

Gene: LEUM_0485: Hydroxyethylthiazole kinase (EC 2.7.1.50)
 
Lactobacillus rhamnosus GG

Gene: LGG_00368: Hydroxyethylthiazole kinase (EC 2.7.1.50)
Hydroxyethylthiazole kinase (EC 2.7.1.50)
thiE
 
Oenococcus oeni PSU-1
 
Lactobacillus reuteri JCM 1112

Gene: LAR_0970: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus fermentum IFO 3956

Gene: LAF_0801: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1

Gene: lp_0115: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Lactobacillus casei ATCC 334

Gene: LSEI_0300: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Lactobacillus brevis ATCC 367

Gene: LVIS_2097: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Lactobacillus sakei subsp. sakei 23K

Gene: LSA0057: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_0560: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
*2
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Site:
position = -223
score = 64.25
sequence = ATATGTATGTCTGGG...

Gene: LEUM_1159: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)

Gene: LEUM_0487: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
 
Lactobacillus rhamnosus GG

Gene: LGG_00369: Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
Thiamin-phosphate pyrophosphorylase (EC 2.5.1.3)
thiD
 
Oenococcus oeni PSU-1
 
Lactobacillus reuteri JCM 1112

Gene: LAR_0969: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus fermentum IFO 3956

Gene: LAF_0802: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1

Gene: lp_0114: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
 
Lactobacillus casei ATCC 334

Gene: LSEI_0301: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
 
Lactobacillus brevis ATCC 367

Gene: LVIS_2098: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
 
Lactobacillus sakei subsp. sakei 23K

Gene: LSA0058: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
 
Pediococcus pentosaceus ATCC 25745

Gene: PEPE_0559: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_0486: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
 
Lactobacillus rhamnosus GG

Gene: LGG_00370: Phosphomethylpyrimidine kinase (EC 2.7.4.7)
Phosphomethylpyrimidine kinase (EC 2.7.4.7)
LEUM_0933
 
Oenococcus oeni PSU-1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1
 
Lactobacillus casei ATCC 334
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
*
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Site:
position = -349
score = 65.35
sequence = GCTTGTGCTAGGGGC...

Site:
position = -177
score = 79.87
sequence = ATAATCACTAGGGGC...

Gene: LEUM_0933: Xanthine/uracil permease
 
Lactobacillus rhamnosus GG
Xanthine/uracil permease
LEUM_0934
 
Oenococcus oeni PSU-1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1
 
Lactobacillus casei ATCC 334
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_0934: Acyl-CoA synthetase (AMP-forming)/AMP-acid ligse II
 
Lactobacillus rhamnosus GG
Acyl-CoA synthetase (AMP-forming)/AMP-acid ligse II
LEUM_0935
 
Oenococcus oeni PSU-1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1
 
Lactobacillus casei ATCC 334
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_0935: Acyl-CoA reductase (LuxC)
 
Lactobacillus rhamnosus GG
Acyl-CoA reductase (LuxC)
LEUM_0936
 
Oenococcus oeni PSU-1
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1
 
Lactobacillus casei ATCC 334
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K
 
Pediococcus pentosaceus ATCC 25745
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_0936: 3-oxoacyl-acyl carrier protein reductase
 
Lactobacillus rhamnosus GG
3-oxoacyl-acyl carrier protein reductase
cytX
 
Oenococcus oeni PSU-1
*
Lactobacillus reuteri JCM 1112

Site:
position = -182
score = 59.27
sequence = TTGCATAAACGGGGA...

Gene: LAR_1494: Predicted hydroxymethylpyrimidine transporter CytX
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1

Gene: lp_0116: Predicted hydroxymethylpyrimidine transporter CytX
 
Lactobacillus casei ATCC 334
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K

Gene: LSA0055: Predicted hydroxymethylpyrimidine transporter CytX
 
Pediococcus pentosaceus ATCC 25745
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293
 
Lactobacillus rhamnosus GG
Predicted hydroxymethylpyrimidine transporter CytX
LEUM_0768
 
Oenococcus oeni PSU-1

Gene: OEOE_1490: hypothetical protein
 
Lactobacillus reuteri JCM 1112
 
Lactobacillus helveticus DPC 4571
 
Lactobacillus fermentum IFO 3956
 
Lactobacillus salivarius subsp. salivarius UCC118
 
Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365
 
Lactobacillus acidophilus NCFM
 
Lactobacillus johnsonii NCC 533
 
Lactobacillus plantarum WCFS1
 
Lactobacillus casei ATCC 334

Gene: LSEI_0169: hypothetical protein
 
Lactobacillus brevis ATCC 367
 
Lactobacillus sakei subsp. sakei 23K
*
Pediococcus pentosaceus ATCC 25745

Site:
position = -206
score = 55.05
sequence = GATTTTGTAACAGGG...

Gene: PEPE_0334: hypothetical protein
 
Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293

Gene: LEUM_0768: hypothetical protein
 
Lactobacillus rhamnosus GG
hypothetical protein
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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