Collection of Manually Curated Inferences of Regulons in Prokaryotic Genomes
-- version 4.0 --

Regulog T-box(Val) - Staphylococcaceae

Properties
Regulator type: RNA regulatory element
Name: T-box
RFAM: RF00230
Regulation mode:
Biological process: Amino acid metabolism
Effector: Val-tRNA
Phylum: Firmicutes
Member of regulog collections
Statistics of regulated genes
Genome Genes Operons
Staphylococcus aureus subsp. aureus N315 1 1
Staphylococcus capitis SK14
Staphylococcus epidermidis ATCC 12228 1 1
Staphylococcus carnosus subsp. carnosus TM300 1 1
Staphylococcus haemolyticus JCSC1435 1 1
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305 1 1
Macrococcus caseolyticus JCSC5402 1 1
Clusters of co-Regulated Orthologous operoNs (CRONs)
Genes Function
 
CRON 1.
valS
*
Staphylococcus aureus subsp. aureus N315

Site:
position = -346
score = 70.41
sequence = GTTTAATATAGGATT...

Gene: SA1488: Valyl-tRNA synthetase (EC 6.1.1.9)
 
Staphylococcus capitis SK14
*
Staphylococcus epidermidis ATCC 12228

Site:
position = -286
score = 95.87
sequence = AAAGAATATATTATT...

Gene: SE1339: Valyl-tRNA synthetase (EC 6.1.1.9)
*
Staphylococcus carnosus subsp. carnosus TM300

Site:
position = -253
score = 108.81
sequence = GTGAATAATAGAAAT...

Gene: Sca_1269: Valyl-tRNA synthetase (EC 6.1.1.9)
*
Staphylococcus haemolyticus JCSC1435

Site:
position = -261
score = 120.91
sequence = TGAAATATATTATTG...

Gene: SH1263: Valyl-tRNA synthetase (EC 6.1.1.9)
*
Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305

Site:
position = -285
score = 89.35
sequence = AAATATTGTCTACTG...

Gene: SSP1101: Valyl-tRNA synthetase (EC 6.1.1.9)
*
Macrococcus caseolyticus JCSC5402

Site:
position = -246
score = 95.47
sequence = ATATTATATCAGGAA...

Gene: MCCL_1298: Valyl-tRNA synthetase (EC 6.1.1.9)
Valyl-tRNA synthetase (EC 6.1.1.9)
Bluish color - the gene is in regulated operon. Different regulated operons are shown in different shades of blue.
Red color - the gene is in non-regulated operon.
Gray color - the orthologous gene is absent.
The star symbol - the TFBS is located in upstream region of this gene.
The number - the numeber of homologs (shown only if it is greater than one).
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Regulated Genes [ Tab delimited format ] DOWNLOAD
Regulatory Sites [ FASTA format ] DOWNLOAD